Cpal011484.1
Basic Information
- Insect
- Crataerina pallida
- Gene Symbol
- lolal
- Assembly
- GCA_949710015.1
- Location
- OX453292.1:28519656-28527040[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-19 4.5e-16 58.2 0.0 2 45 608 652 607 652 0.97 2 2 4.5 8.8e+03 -3.5 0.9 3 11 685 693 685 696 0.81
Sequence Information
- Coding Sequence
- ATGTCAGTCCAACAGTTTTGTTTGCGTTGGAACAATCATCAACCGAATTTTATATCGGTGTGTTCCTCATTACTCCACAATGGCACATTAGTTGATGTTACTTTAGCGGCTGAAGGTAATCAATTGCAGGCGcacaaaattgttttgtcAGCATGCAGTTCATATTTTCAGagTCTCTTCACAATGAATCCCTGTCAGCATCCTATTGTCATATTAAAGGATGTTCAGTATGATCATTTAAGGACAATGGTTGATTTTATGTACTATGGTGAAGTGAATGTGTCGCAAGATCAATTGCCACACATCCTTAAGACGGCGGAAATGTTAAAAATCAAAGGACTCGCTGAAATGCCCACGGATCCAGCTAATCTCATAAGATCTGACAGTAAATCCGCGAACGATACCACCGAATTAGTTGGCACAGCAGCGAGTACTAGTGCTCCAAGTAATAGTGGAGGTGCTGGTGGTGGTAATACCAATAGCAATGGCGGTGGTCTTGTAAATAGTGGCAGTGCCGGTTTAAGCGGTACTTTATGGTCCAACTCCGAGTCACAATTTCATGCGCAACAGCAGCCGCAACAACATCAAAGTCAACAATCAGCTCAGCACCAAACACAGCCGCAACAACATCACCAACaattacaacagcaacaacaacaccataatcaacagcaacaacatcaacaacaacaactgcataCACAACTACAAAATAGTCAAACGCAAATATCAcaacagcaccaacaacagcaacagcagcaacaacaacaacatcatcatcatcatcagcaaatCAGGCGTACACCATCACCACTGGGAGCCGGTGCATCTCCAGCTGCCCGACGAAAACGTATACGTAAATCTTCAAATAACGGTTCTGGTGAACGAAACAATTCAGACGATCAACATAATAGCGGTTTGGAAACTGGTCCGGGTGGTGGTTTAACTTTATCACAAATGAGCCAAATGTCTTTTGGTGGTGGAGCTAGTACGAGTGGTCTTAGTGGTTTGGCCACACACTCACTGCATACCGCCAAATTGTTGAAGGAGGCGGCCAACAATGATATGGAAACTCATCCACAAGATTCTGACAGTTTGGACGATACTCATGGCCACGTACATATTCAAATTAAGCCAGAAGTTGATATTACGGGCATACAACAATCGATACCATTGGATATATCAGGCGCTACCACACCATCTGAACATGATGCACCCAACACACAATCAGCTCATTCAGGTTTGCAATGGACAGTCGTTGAATCGAATTATTCGCGCTTTTCTCTGGCATCTTGTCCCACTAATTTAATTGGTAATGCGGCCGGCACCAcgacaaataataataataataataacaacagcaacaacaacaatcaaaatTCAAATCCGAATAATGGCAATGCTGTTAACGAACAGCAGTCGCAGcagcaacaattacaacaacaacaacagcaacagcgtCAACAACATGATTCGGTAAACAAtccacagcaacaacaacaacagcagcaacatttacaacaacaattacaatatcaacaacaacaaaattcttCCTATTCACCACAAATAATAACGGTTAGCGGTTATTCGAATGcagcagctgctgctgctgctgtggCTGCTGCACAAAATCTTTCATCGCCGTCACCGAATGATGCCATGGTACAATCGGTATATAGTCAGGGTCCAACACCATCACCCTCACCAATTGGCAACACCTCAGGCAGCAGTTCAAATAATATGTCCACCACAAATGCCGCCAACAGTACTAATAACGGTAATAATGTAAAACGTAAACGTTCAGTAAATCCGCAAGGTGATGAAAACTTCATAAGAGCTTTGGAAGCGGTACGTTCAGGTGGCATTGGTTTTTGTAAAGCGGCACGCCTATATGGTGTTAACAATCGTACATTGTGGCTGGAATATAAGAAGCGGGGCTATCCGGTTTCAAGGCCTAGCATAAAATCACGCGTTGTTAAACAAGAACCGAATCTGTCGCCATCACCGACACCGCCCACCAATACTGCCGACGATACAAACGAAAATTATGAACATATGGCGGCTGCGGTGGCTGCAGCCCAAACAGCTGCTTTAAATATGCAAATACCACCAACATCCGATACACCAACATCGTCACTGATGTGTACACCACATCATGGCAGCAGTGCAGCAGCTAGTGGTGCCGGTAGTCATCCCACCATGGGTGTAATGAGTTTCCTCGACACTCGTCCCATGGATTTTCACGCTAGTCTACACTCCATGTCCCGTCAACGGTATATTGATGCGACTGGGGCCAATGGCGGTACAAATGCTACGGGTACAATAAATGTTAATCCGGCTGCAGCTGTCAATTTGCCGGGcatcaatttcaattcaatatag
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGNQLQAHKIVLSACSSYFQSLFTMNPCQHPIVILKDVQYDHLRTMVDFMYYGEVNVSQDQLPHILKTAEMLKIKGLAEMPTDPANLIRSDSKSANDTTELVGTAASTSAPSNSGGAGGGNTNSNGGGLVNSGSAGLSGTLWSNSESQFHAQQQPQQHQSQQSAQHQTQPQQHHQQLQQQQQHHNQQQQHQQQQLHTQLQNSQTQISQQHQQQQQQQQQQHHHHHQQIRRTPSPLGAGASPAARRKRIRKSSNNGSGERNNSDDQHNSGLETGPGGGLTLSQMSQMSFGGGASTSGLSGLATHSLHTAKLLKEAANNDMETHPQDSDSLDDTHGHVHIQIKPEVDITGIQQSIPLDISGATTPSEHDAPNTQSAHSGLQWTVVESNYSRFSLASCPTNLIGNAAGTTTNNNNNNNNSNNNNQNSNPNNGNAVNEQQSQQQQLQQQQQQQRQQHDSVNNPQQQQQQQQHLQQQLQYQQQQNSSYSPQIITVSGYSNAAAAAAAVAAAQNLSSPSPNDAMVQSVYSQGPTPSPSPIGNTSGSSSNNMSTTNAANSTNNGNNVKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPTNTADDTNENYEHMAAAVAAAQTAALNMQIPPTSDTPTSSLMCTPHHGSSAAASGAGSHPTMGVMSFLDTRPMDFHASLHSMSRQRYIDATGANGGTNATGTINVNPAAAVNLPGINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00384661;
- 90% Identity
- iTF_00384661;
- 80% Identity
- iTF_00384661;