Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990985.1:4758937-4772787[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00027 0.026 15.7 0.8 1 23 238 260 238 260 0.99

2 9 0.0011 0.1 13.8 0.8 1 23 267 289 267 289 0.99

3 9 0.045 4.2 8.7 2.6 1 23 293 316 293 316 0.90

4 9 0.053 4.9 8.5 2.7 1 23 323 345 323 345 0.99

5 9 0.00087 0.081 14.1 3.4 1 23 351 373 351 373 0.96

6 9 3e-05 0.0028 18.7 1.8 2 23 380 402 379 402 0.93

7 9 0.00078 0.074 14.2 0.9 1 21 407 427 407 432 0.93

8 9 1.2 1.1e+02 4.3 0.0 1 23 440 463 440 463 0.89

9 9 0.2 18 6.7 1.0 1 19 469 487 469 492 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00027	0.026	15.7	0.8	1	23	238	260	238	260	0.99
2	9	0.0011	0.1	13.8	0.8	1	23	267	289	267	289	0.99
3	9	0.045	4.2	8.7	2.6	1	23	293	316	293	316	0.90
4	9	0.053	4.9	8.5	2.7	1	23	323	345	323	345	0.99
5	9	0.00087	0.081	14.1	3.4	1	23	351	373	351	373	0.96
6	9	3e-05	0.0028	18.7	1.8	2	23	380	402	379	402	0.93
7	9	0.00078	0.074	14.2	0.9	1	21	407	427	407	432	0.93
8	9	1.2	1.1e+02	4.3	0.0	1	23	440	463	440	463	0.89
9	9	0.2	18	6.7	1.0	1	19	469	487	469	492	0.91

Sequence Information

Coding Sequence: ATGACAGAATATAATACTTTTGGTGTTGCTAATATGAAGAGTATTTGCCGAGCTTGCCTCCGGGTGGACGAAGAAGTATTTCCAATGGTTGGTTTGGAGATAGAAGCGTATCAAAGTTTAACACAAAAGGTTGCAGATATGGAAAACAATATGAATCTTTGTCTAGTTTGCAAATGGATGTTGAGCAAATGTATAAAATTTAGTCAGCAGTGTCAGAGGGCTCAAAACTTGTTGAAAACTGTTCAGGAATCAAAATCCTTTTTCTTTCCACAACAAACTTCTGTTTATGACATGAAAATATCTAGCTTAGATTCACATTACCTAGGGCCTGACTGTAGTCTAGACATAGAAGATGAAAAGGCTGAGTACATGCCCTTGAATGATCAGATATATGATGATGATGATGATGAGGAATTGCCTCTAGTGATGTTGCAAGATGGATATAAGAGTAAACGGAAGAAATTAAAGAATTATGAGATAATTGCCGAACCAGAAATCAAGCAAGAACTATTCATCAAAGAAGAATACACAGATGAATTCTGTGACAAAGTACGCAAGAGAAGTAAAGAGAAGAAGAAAGTAGTGAAAGAAGGTTTCTCTTCTAGAATGGTGCAGGAGACTGATGAATATATTGTTATTAAACTTACTAAAGAACAGGTTTTATTAGAACTAGAAGAAAAGGCGAAAATTGAATCGTATATTAGATCGCCGTATAAATGTGACAAGTGTGTGAAAGGATTCAACTTCGAAGACGTTTTGCAAACGCACATGGAGAAACACAGTCTGGAGCACGGCACATACCAGTGTGACATTTGTACGCAGTACTGTCCCAGCCCCGTCTCACTGCGTGGTCATCTCAAGTCGCATACTACTAGATATAAGTGCAAGTTGTGCGGGCAGGTCCGTCTGTCCCGCCAGCATCTGCTGGAACATCATGCCATCACCCACACGGCGGCGCCCACCGTCTACACCTGCGACAAGTGCCAGTTTACCACCAATAAACGCACAGTAATACAGCGACACGTGAAGACACACGCGCCGGGCGAGCGGCACGCGTGCCATCGCTGCGGGAAACTGTTCAACACTGTTGAGTCCCTCCGAGTACACACCATGCGTCACGACAAATCAAAACGACTACAATGCGAACATTGCGACAAGCATTTTATTTACCCATCGCTATTACTGAAACACACACAAGCGGTGCATGAGAGGAAAGACTACTACTGCGTCGAGTGTGATGTGCGGTTCAAATCCCCGGAGAGTTTGAGACTACATTTCAAAAAAGCTAAACGCCATCGAGACCCGTCGTCATACAAGCACCAGTGCAGCGAGTGCCGGGCGCTGCTGGCGAGCGCGGGCGCGCTGGCGGCGCACCGGGCGGGCGTGCACGGCGCGGCGGCGCAGCACGCGTGCGGCGCGTGCCGCCGCCGGTACTGCAGCCGCGACGCGCTGCGGGCGCACGCCTGGCGAGTACACGCGCACCACAAGCGTAAGAGTGTGAAGGTACACGCGAAGAACCACCCGGCTGACTGCGACTGTGGCGCCATCTGTACCCAAACGGACAGCTTTAAGACCCAACCCCCTATACATCAGAAACCAGAAGAATTGTCTAACGGTGTTGCCATCACAGCAGATATGCCACAGGAAGGGTGA
Protein Sequence: MTEYNTFGVANMKSICRACLRVDEEVFPMVGLEIEAYQSLTQKVADMENNMNLCLVCKWMLSKCIKFSQQCQRAQNLLKTVQESKSFFFPQQTSVYDMKISSLDSHYLGPDCSLDIEDEKAEYMPLNDQIYDDDDDEELPLVMLQDGYKSKRKKLKNYEIIAEPEIKQELFIKEEYTDEFCDKVRKRSKEKKKVVKEGFSSRMVQETDEYIVIKLTKEQVLLELEEKAKIESYIRSPYKCDKCVKGFNFEDVLQTHMEKHSLEHGTYQCDICTQYCPSPVSLRGHLKSHTTRYKCKLCGQVRLSRQHLLEHHAITHTAAPTVYTCDKCQFTTNKRTVIQRHVKTHAPGERHACHRCGKLFNTVESLRVHTMRHDKSKRLQCEHCDKHFIYPSLLLKHTQAVHERKDYYCVECDVRFKSPESLRLHFKKAKRHRDPSSYKHQCSECRALLASAGALAAHRAGVHGAAAQHACGACRRRYCSRDALRAHAWRVHAHHKRKSVKVHAKNHPADCDCGAICTQTDSFKTQPPIHQKPEELSNGVAITADMPQEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -