Clig013293.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990982.1:4285817-4309221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 1.9e+02 3.5 0.9 2 23 476 497 475 497 0.89 2 17 0.00022 0.021 16.0 0.1 1 23 507 530 507 530 0.95 3 17 0.073 6.9 8.0 2.9 1 21 650 670 650 671 0.94 4 17 0.033 3.1 9.1 3.8 2 23 734 755 733 755 0.95 5 17 0.63 59 5.1 0.6 1 23 767 791 767 791 0.90 6 17 0.00012 0.011 16.8 0.3 2 23 798 821 797 821 0.97 7 17 0.064 6 8.2 0.2 1 23 827 849 827 849 0.93 8 17 0.0031 0.29 12.4 2.9 1 23 855 877 855 877 0.98 9 17 0.59 55 5.2 0.1 2 15 888 901 888 904 0.87 10 17 0.59 55 5.2 0.1 2 15 928 941 928 944 0.87 11 17 0.59 55 5.2 0.1 2 15 968 981 968 984 0.87 12 17 0.59 55 5.2 0.1 2 15 1008 1021 1008 1024 0.87 13 17 0.065 6.1 8.2 0.3 2 19 1048 1065 1048 1068 0.90 14 17 0.036 3.4 9.0 0.2 1 23 1147 1169 1147 1169 0.97 15 17 1.9 1.8e+02 3.6 7.2 1 23 1176 1198 1176 1198 0.95 16 17 0.0013 0.12 13.6 1.8 1 23 1244 1267 1244 1267 0.95 17 17 0.00021 0.02 16.0 0.7 1 23 1274 1297 1274 1297 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAGCCACCACCCCCATTGATCCTCTGCATGGAGAATGCTGCAGGCGAGGATGTGGCACTCAAAATAGAACCAGATGATGACTTCCAGATGTTTCTGGATAAAGCCAGATCACTCCTAGGCTTCGACGTAGACCTAAACTCTATAACCAGGAACCAGCCTGTATCGCTATCAGAAAATGTATACCAATTCCTGATAAGCGCTGAACAAAATATGCAAGCAGACGAACTCTCACATAACTTTGATCAAATGTTGGATACCAATGATGGGGCCAATGATTTGGTCTACATATTAGACGATGGGACTCAAATCCGAGCTTCACAGATACATTTTGATAACGATGACCCGTTAATAGATTTGACAGCTGAGAAAATACCCTTCGTGAAATACGCAGATGACGTTACCGACGATGTAGATTTAGATAATATACACGTTGAGGAAACTAAGAAAATCAATATAGTCGAAAGCCCCGTATCGCGCTGGTCGAGTAAAAACTCTAGTCCGAAATGCAGTTTCGTCAATTCCCTGCCTTTCAAATTGGTATGCAATAACACTTCGGGCTTCGAAGCCCAATTCACCAAATATTTAGAAGCGAATACACCCAAAACGTATGCTACTTTGAATCCGGTTACAATTCGCAATAAGTCCCCGAAAAGTTTGATTAAAGATAATTTTAAGAACTTCGATGATAGTTATACAAGGAATGATAATCTGTCGTATACTCGGGAGGACATTTTGAACATGTTCAAGGACTCTCCTATGACGTCATTACCGTATGACCAAGGTTACAGTGAAAGGAGACATGTTCGGAAGACAGATCCGTCAAGACTCGTTCATAAGAGTTGGAATAAACCGATTTCGTATGTAGATATCGATGGAGTCTTGATAGGAGAAAGCGAGAGCCAAATATGCTTTATTTGCGGTAAGCATGTTGATAACAGCTTGGATAAATTGTACCTCTTCGATAACGAAGATCAGAGGCTACATCGTTGTTCGCCGCAAAAGAAAATGTCCACTCAATTGAAAATAATCTGTGAATGCTGTCTAAACGAAAACTTCAAACCTTGCAGAATGAAAAGCGCTAACCAATTCTTGAATCCTGACGAGTTTCTCGTCATTAGAAATAATCAACAGTATATTTTTCAAAAGATTAGAAACTTCAGTTTCACGCATATGGGAAAAGCTAAAGATAGCATGAATAAGATGGATTCCAAAACAGAAAAGGAAGAGTTTGTTAAAGTCGAAATCGGATCTGATGGAGAGATTATAACGAAAAAAGAGGATGGCACTTCCAGTGACGTAGAGATCATAGAGCCGGAACCGGAAATAGACAATATCATAGACAATTTAGAGGAAGCGGATGAGGAGGTCAAAGAGTTTTTGGGGAAATATCAGTGTGACAATAGGGAGGTTACTGAACTTAAATGCAGATTCTGTGAGCGAATATTCGCGGATCTGGTCGAGGTGACGGACCACTGTGAAACACATAAACACGATTTGGAAGACGGCGAGGTGTTTCCTTGTCCACTTTGTAACTACGGTTACGCAAATCAAAAATGGCTGAAAGCTCACTTAAAAGCGGCTCACGAGAAAACAGAAGAGTTAAAAGAAGTAAATAATACGCTCAAAGAGGAGGACAAAGATGATGAAAACACATCGGCCAATGCATCACCGCCCATTGCGACTCGCACAAGAAGCTCCAATAAAAAGAAAGACAGTGAAAAAGATACTGAAGACCAAGAAGATAACGTTAAGGCTGATGGTAACACTGAATCGGTCGAACCACCCATCATAAAGACAGAAGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATCTGGATTGTGCAGACAGCTGATGCTCAGGGCACGCAAGAGTTTCAGAAACTGTTGTGTGCTGCTAAGGCTGGCGATGGGCAAGAAGGCGATTCTGAAAGGACGCACAAATGTTTCAATTGCAGTCAAATATTCTCAACCGCGGAAGGTCTGTCGACCCATCGATGTCGCAGGCGGGGACGGAAGAGGAAGAGCAAAGACCTGATGAGCCTCATATGTGTACCAACTGAGGAAGACTTCTTGAAGAGAGCACAGGGTCGTCCTAGACACGTCGATACGTCAGTTGATAATAATCTGCTTGTGATGCGTCCTCGTAAGCGTCGCAGCCGGGAGCCGGCTTCGAACCCTCAAGTGGTAACCTGTCACAACTGCAATGAGTCCTTCACCTCCAAAGTTAGACTAAAGTTTCATATGCAGTTCCACGACACCACAAACCTGGTGACTCCAGACGGGCGCTACTCGTGCTCAGAGTGCGACGGCGCTACCTTCGCGACAGAGACGGAACTATTCGACCACGTGCACTTCCAACACGACAAGCAGAAGCGGTGGCAGTGTCCTGTTGATGGCTGCGGGAAGACCTTCTTTCTTAGGGCAACACTAACCAAACACAGTCGCACGCACACAGACACACGACGCTATGTGTGTGTGACGTGTGGGAAGCGATTTTTGGACAAACAAACGTTGGACGAACATGGAGTTACACATTTACAGATCAAGCCGTTCCAGTGCCACATCTGCCTGAAGCAGCTGACCCGTCGCTCCCGGCTGCGCATGCACGTGCGTGCTCACGAGGAGGAGCTGTCGCCCCGCCTCGTGCGGGTGTGCGCCGTCTGCGGCCGGGCCTTCCGAGACCACCGACACGCGCAGCTGACCCGTCGCTCCCGGCTGCGCATGCACGTGCGTGCTCACGAGGAGGAGCTGTCGCCCCGCCTCGTGCGGGTGTGCGCCGTCTGCGGCCGGGCCTTCCGAGACCACCGACACGCGCAGCTGACCCGTCGCTCCCGGCTGCGCATGCACGTGCGTGCTCACGAGGAGGAGCTGTCGCCCCGCCTCGTGCGGGTGTGCGCCGTCTGCGGCCGGGCCTTCCGAGACCACCGACACGCGCAGCTGACCCGTCGCTCCCGGCTGCGCATGCACGTGCGTGCTCACGAGGAGGAGCTGTCGCCCCGCCTCGTGCGGGTGTGCGCCGTCTGCGGCCGGGCCTTCCGAGACCACCGACACGCGCAGCTGACCCGTCGCTCCCGGCTGCGCATGCACGTGCGTGCTCACGAGGAGGAGCTGTCGCCCCGCCTCGTGCGGGTGTGCGCCGTCTGCGGCCGGGCCTTCCGAGACCACCGACACGCGCAGGAACACGCAACAAAATCATCGGAATGCATCGAGGCTTTCGCCAACGAGCTGAAGGAGGAGGCTGAAGAGGTTACACTCCAGTTGTCGCCCACCAGTGGACTGGTGCGGCATACCGTGCAGATCGTCGAGTCGCCGAAGCTTTCGAAGCCAATAAAGCGGCAAGTGTCGAGCGAGGCGGGCGAGGCGCTGCTGGCGGCGCTGGCCGACGAGGCGCGCGCGCTCATACGCGTCGTCGAGATCGAGAAGGCCTTCCGCTGCGAGTACTGCGAGGATGTGTTCTACTTGGAGAGCGGTCTGAACACCCACCGCGCTATTCACAAAGGCGTGAAGAATCCCTTCACTTGTCATATATGCAAAGTCAGCTTCGCCACTTATTCCAGATGCACAACGCACAAAACTACACACGGCTTCTACAAGCGCTCTTTAGCGGACGCTAAGAAGCAAGCAGACGGCTTGCCGCCGACCGACACCGAGGCCGCGGCGGCCGGACCGTCCGCTACCGGCATACTGGGATACGGCGACTTCCCTGTAGTCAAACATTTTCTCTGTGAGGACTGTGGTCGGTCGTACCTGCACTGGACTTACTTACAAGTGCACAGACGTATGAAGCACGCCAACGAAAGCTTCTTGTATAAGTGTAACCAGTGCGAGCTCACCTTCCCTAACAGTTGGAGCTTGGCGTATCATCGCAAGAAGGTACACGGAAAATCCGGACCGGACGATCCCGGCGCCACTAGCAAAATAAGCAGAGATGACTACAGGTAA
- Protein Sequence
- MSEPPPPLILCMENAAGEDVALKIEPDDDFQMFLDKARSLLGFDVDLNSITRNQPVSLSENVYQFLISAEQNMQADELSHNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYADDVTDDVDLDNIHVEETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTPKTYATLNPVTIRNKSPKSLIKDNFKNFDDSYTRNDNLSYTREDILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKSWNKPISYVDIDGVLIGESESQICFICGKHVDNSLDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFKPCRMKSANQFLNPDEFLVIRNNQQYIFQKIRNFSFTHMGKAKDSMNKMDSKTEKEEFVKVEIGSDGEIITKKEDGTSSDVEIIEPEPEIDNIIDNLEEADEEVKEFLGKYQCDNREVTELKCRFCERIFADLVEVTDHCETHKHDLEDGEVFPCPLCNYGYANQKWLKAHLKAAHEKTEELKEVNNTLKEEDKDDENTSANASPPIATRTRSSNKKKDSEKDTEDQEDNVKADGNTESVEPPIIKTEVKQECLDSSEDEIWIVQTADAQGTQEFQKLLCAAKAGDGQEGDSERTHKCFNCSQIFSTAEGLSTHRCRRRGRKRKSKDLMSLICVPTEEDFLKRAQGRPRHVDTSVDNNLLVMRPRKRRSREPASNPQVVTCHNCNESFTSKVRLKFHMQFHDTTNLVTPDGRYSCSECDGATFATETELFDHVHFQHDKQKRWQCPVDGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELSPRLVRVCAVCGRAFRDHRHAQLTRRSRLRMHVRAHEEELSPRLVRVCAVCGRAFRDHRHAQLTRRSRLRMHVRAHEEELSPRLVRVCAVCGRAFRDHRHAQLTRRSRLRMHVRAHEEELSPRLVRVCAVCGRAFRDHRHAQLTRRSRLRMHVRAHEEELSPRLVRVCAVCGRAFRDHRHAQEHATKSSECIEAFANELKEEAEEVTLQLSPTSGLVRHTVQIVESPKLSKPIKRQVSSEAGEALLAALADEARALIRVVEIEKAFRCEYCEDVFYLESGLNTHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGLPPTDTEAAAAGPSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANESFLYKCNQCELTFPNSWSLAYHRKKVHGKSGPDDPGATSKISRDDYR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -