Clig023827.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990985.1:396434-405301[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 1.1 10.5 5.8 1 23 210 232 210 232 0.98 2 11 0.11 11 7.4 0.3 2 23 240 262 240 262 0.95 3 11 0.31 29 6.1 0.9 1 23 266 288 266 288 0.94 4 11 0.0022 0.21 12.8 2.1 1 23 293 316 293 316 0.95 5 11 0.02 1.9 9.8 0.2 1 23 320 343 320 343 0.95 6 11 0.73 69 4.9 0.7 1 19 355 373 355 375 0.93 7 11 1e-05 0.00094 20.2 0.6 1 23 387 409 387 409 0.99 8 11 0.0016 0.15 13.3 1.6 2 23 414 436 413 436 0.96 9 11 1.7e-05 0.0016 19.5 0.5 2 23 456 477 455 477 0.97 10 11 1.3 1.2e+02 4.1 1.6 1 9 483 491 483 494 0.87 11 11 2.2e-05 0.002 19.1 1.2 1 19 499 517 499 519 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATCTACTAGCATGTCGGGTTTGTCTCGCTACAAACGTAAACCTCTACGATATGTACAAATACAAGATAAAAAATGTTTTCGAAATTCTTACGGGCATTAAAGTAACTCCAACAGAAAATTATCCGCAATACTTGTGCACATACTGCGGTATGCTCCTCCTCAAGTACAGCACCTTCAGGGCCAAATGCAGGAAGACACAGGAGATCTTGGAATATGCTGAAATGAAAAGCACAATTCTAACAACACAAGAAATTAAATCACTAGGAATTTCAAACAACACAAATATCGCTTTTACAACATCACCAACAGAAATCACCACAATCTCCAACACCATTAAGATTGAAGACCCAGTCTCCGATATAATCTTCAAAGAGGAAGTGGTGGATGAAAGTGATGAAGAGCCTCTGGCGAACAAGGTGAAGAAGAAGGAGTTTAGCGTTGATGTACTGCCTTGCAACCAGGATGAAATTGATTTCAATGACTTTGAAGTCAGCGAGGGAGTTTTTGAGGCTGATGTTGAGTTGGCAGTCAATGATATTGAGGTGTTATATCTGTCAAAAGAGGAACAACTCCAAGAAGTATTGGCTCGCAAGGACTCATACAACTACATACATTCGTTATACAAGTGTTGCCATTGTTATAAAGGCTTCATACAAGACGCGACATACAAGAACCATATGGTCCGACATGAACCGTCATATGGCAAAGAAACCTGCGACATTTGCAAAACACGATGGCCGGACCAGCGATCGTTGAAATCCCACGCGACGACCGCCCACGAACGGAAATACATCTGCAAACTGTGCGACCAGGTCTCCAAGACCATCCACAGGGCTAAAGAGCACCTGCAGTGGCACCAAGGTCACAAGTACACTTGCAATATCTGTGGAGCCACCTTTTCCAAGTCCACCAGCCATCTGACACATCTGAGATTGCAGCACCCAACCAAATATTGTTGTGAAGTTTGTGGAGAAAGTTTTCTTGGAGAAATTGGTTTGAATATGCATATCAAGAAGGCTCATAGGGGTTTTGAGAAAGATAATATGAAATCAGAGTTTAAATGTGCAGTCTGCGATGTGTATTTCAAATGTATGGAGGCGTTAAAACGTCATGCTAGTGGCTTTGAAAATGGTTTATGTGATAAAAGTCTATATTCCTGTTTTCAATGTGGTGAAAATGTCTCCTCTCAGGAGTCACTAAGAGATCATATGAAAACTCATGAAGTGGGGGTCAGGTGTGACGAATGCAACAGAAACTTCGCCCACGAGCGCTCGTTCTCGGTCCACTACCAGCGCGTGCACCTCGGCATCAAGCTGAGGCACTTCAAGCCCAAGGACAAGAGGAAGCGAGGCACCTGGGTCTGCGAGATGTGCGGCAAGAAGTGTATCTCCAATGCTGCATTGATTTATCATCAGCGCACACACACTGGGGAAAAGCCGTTCCAATGTAAAGACTGCCCGAAAAAGACACATACTGGTGAAAGACCCTATAAGTGTTCCACCTGCCCCAAAGCCTTCAAACACAAAGCGGCGCTCAACAGGCACGACCGGGTAAGAATACTATAG
- Protein Sequence
- MEDLLACRVCLATNVNLYDMYKYKIKNVFEILTGIKVTPTENYPQYLCTYCGMLLLKYSTFRAKCRKTQEILEYAEMKSTILTTQEIKSLGISNNTNIAFTTSPTEITTISNTIKIEDPVSDIIFKEEVVDESDEEPLANKVKKKEFSVDVLPCNQDEIDFNDFEVSEGVFEADVELAVNDIEVLYLSKEEQLQEVLARKDSYNYIHSLYKCCHCYKGFIQDATYKNHMVRHEPSYGKETCDICKTRWPDQRSLKSHATTAHERKYICKLCDQVSKTIHRAKEHLQWHQGHKYTCNICGATFSKSTSHLTHLRLQHPTKYCCEVCGESFLGEIGLNMHIKKAHRGFEKDNMKSEFKCAVCDVYFKCMEALKRHASGFENGLCDKSLYSCFQCGENVSSQESLRDHMKTHEVGVRCDECNRNFAHERSFSVHYQRVHLGIKLRHFKPKDKRKRGTWVCEMCGKKCISNAALIYHQRTHTGEKPFQCKDCPKKTHTGERPYKCSTCPKAFKHKAALNRHDRVRIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -