Clig024202.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990985.1:4865373-4878364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.26 25 6.3 0.2 1 23 254 277 254 277 0.94 2 11 0.16 15 7.0 0.3 1 23 285 307 285 307 0.95 3 11 9.1e-05 0.0085 17.2 1.9 1 20 340 359 340 361 0.94 4 11 0.0043 0.4 11.9 1.0 2 21 368 387 368 388 0.92 5 11 0.00014 0.014 16.6 0.6 2 23 404 425 403 425 0.94 6 11 0.00043 0.04 15.1 0.3 1 23 430 452 430 452 0.97 7 11 0.056 5.2 8.4 3.9 1 21 461 481 461 486 0.93 8 11 2.2e-05 0.0021 19.1 2.3 1 23 494 517 494 517 0.93 9 11 0.012 1.1 10.5 0.2 1 23 523 546 523 546 0.87 10 11 0.016 1.5 10.1 0.4 3 19 559 575 557 576 0.89 11 11 0.025 2.3 9.5 0.8 1 23 589 612 589 612 0.96
Sequence Information
- Coding Sequence
- ATGAAGGAAATTAATATTAATATAGAAGGATACAATGTTAACGGGATATGTGTAGGCTGTTTAAGCTATAATCGTCGTATGTTTTACCACAACGACGTAAAAGAATGTTTTCGTCTTCTCGGAAATATAGACGTGCCAGATGGTTTAGAAGTCCAAGTGTGCTGGGAATGTTTAGCATACGTCAGAAGTGCCATCAAGTTTAAGGAACGGATGCTGAAATCTTACGATTTTCTCATTCAATATTCTAAAGAGCATACATTTCTGGACTCTCCAGCAGACTTCGATCCTCATGCAAGCACCAGAATCTCAACATCTGATGTGAATTCTTGCGAGTGTGTACCAAAATTGGAACAGGCAATTATAGATGATGAGAAAGATTTGGATGTCAAAGAGGAGACGGAAGAGAAATATGACATTGAAGTCCCGATCAAAGAAGAAATAGGGGATGATTGTCATTTTGAAGAGTTCCCCACAGCTGACAATGATATATCTTCTGAAGAGGACATTCAGCTGTCCAAATTGAAAGAGAAAGAGACGGAGAGAGTCAAAAAGAAGAGGAAAAAAGAGGACAGGAGACGAGATACGGTAGATACACAACCTGATGATAAGCAGAAAATCAAGAAAGACACAGACAAAACGAAGAATAGAAAGCTAAAGAACCTTCCAGAACATTTGGTAGAACTATACACGATGACGAAACAAGAGATGTGGAATATTAGAAGTGAAGATCTGAATAGCAAAGAGTTTCAAAAGCTTAAGTACAGGTGTGATGATTGCATCATCGCGTTCAACACTGAGAAGCTGATGCTTGATCACCGGAATGGTAAACATCAGCCGAAAAGCGATGACTGCCATCAATGCCCCGTGTGCCGTGCCTACTTCCTCACCAAGGACAACGTGGCAGCCCACAGGGCTCTACACCAGCAGGGGTACAGGTGCCGGGAGTGCGGGTTCCTCACGCTGCTGAAGCGGCGCATGCTGAAGCACTACCTCACGCACACGCCCGCCGGGGACGCGCACGTGTGCCACACGTGTGGCACCAGCTTCAGCACGAAGTCCAAGTTATCATATCACCGCGTCGTTTGCCGCCAGGAGCCCCCGCAGTGCGACTGCTGCGGCAAAGTGTTCGCCAATAAAATGACGCTCAAATACCATCTCAAAATTCTGCCGCAGAATAAAGAAGAGAAACCTAAAGAGAAGCTGTTCATCCCCTGCAAGGGTTGTGACAAGGTGTTCCACTCCAAGAAGAGCTACAGAGCACATGTCGTGATCCACGACGGGTTGACGTACCCGTGCCCGATCTGCGGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGCCACTCGCGCAACCACCGCGAGCGCGAGGCGGGCGCGCTGCACGAGTGCCGCGCCTGCGCCAAGACCTTCGCCAGCCGCGACTGCTACAACAACCACATGCGGCTCAGCAAGCGGCACGTGCCCGAAGACACCTACCAACACGAATGTAATTACTGCGGTAAAAAGTTCGCTACAAAATGGTGTCTAACCGACCACATAGACTGGGACCATCTGAAGAGGATCAAATATCAATGCAGCGTGTGTTTTAAGGCGTTCAAAACGGCGAAAATAATGGTGGCCCATGTGAATAATATTCATGAAGGTAAAAAGAAGGAGACTGAAGGAGAACACTTGTGTGAGATTTGTGGAAAATCTTATAAGACAGTGAAGCGTCTGAAGGGGCACGTGTGGGCGATGCACACGAAGCGCTCGAACACGAAGAGCTACAAGTGCAAGCTGTGCCCCGCCACCTTCACGTGGCAGACCAGCATCTACAAGCACGTCAAGATGATGCACACCGCCAGCACCAACGCCAAGACCAAGGCACCTCGCTCCGTGGCCCCAGTGAAGAAAGAGGAGCCCTACCCGGGCCTCGAACTGGCGAACCGCATGCAATACTTCCAACAGAACATCACACGCAACGTCAACATAGTACACATACAGCCTTTAGAAATAGTACCGAATATTGTACAATGA
- Protein Sequence
- MKEININIEGYNVNGICVGCLSYNRRMFYHNDVKECFRLLGNIDVPDGLEVQVCWECLAYVRSAIKFKERMLKSYDFLIQYSKEHTFLDSPADFDPHASTRISTSDVNSCECVPKLEQAIIDDEKDLDVKEETEEKYDIEVPIKEEIGDDCHFEEFPTADNDISSEEDIQLSKLKEKETERVKKKRKKEDRRRDTVDTQPDDKQKIKKDTDKTKNRKLKNLPEHLVELYTMTKQEMWNIRSEDLNSKEFQKLKYRCDDCIIAFNTEKLMLDHRNGKHQPKSDDCHQCPVCRAYFLTKDNVAAHRALHQQGYRCRECGFLTLLKRRMLKHYLTHTPAGDAHVCHTCGTSFSTKSKLSYHRVVCRQEPPQCDCCGKVFANKMTLKYHLKILPQNKEEKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHREREAGALHECRACAKTFASRDCYNNHMRLSKRHVPEDTYQHECNYCGKKFATKWCLTDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHVNNIHEGKKKETEGEHLCEICGKSYKTVKRLKGHVWAMHTKRSNTKSYKCKLCPATFTWQTSIYKHVKMMHTASTNAKTKAPRSVAPVKKEEPYPGLELANRMQYFQQNITRNVNIVHIQPLEIVPNIVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017645;
- 90% Identity
- -
- 80% Identity
- -