Clig027768.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990968.1:1652388-1660716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00014 0.013 16.6 0.9 1 23 295 318 295 318 0.92 2 11 0.0054 0.51 11.6 3.3 1 19 332 350 332 354 0.92 3 11 2.4e-05 0.0023 19.0 3.7 2 23 360 381 359 381 0.97 4 11 0.0041 0.39 12.0 2.6 1 23 385 408 385 408 0.90 5 11 0.01 0.98 10.7 0.3 2 23 412 433 411 433 0.95 6 11 0.00088 0.083 14.1 0.4 2 23 505 526 504 526 0.96 7 11 0.053 5 8.5 0.3 2 23 546 568 545 568 0.96 8 11 9.7e-07 9.1e-05 23.4 4.1 1 23 574 596 574 596 0.98 9 11 0.00038 0.036 15.2 2.6 1 23 601 623 601 623 0.98 10 11 0.02 1.8 9.8 5.0 2 21 630 649 629 652 0.94 11 11 0.15 14 7.0 1.7 3 19 692 708 691 713 0.94
Sequence Information
- Coding Sequence
- ATGGAAGGTGAAGAGTGTGACGTGAATGTTGAGGGTCCATACCCGATACTATTCATACCAAAAGTGTGTACAGCACTGGAGACCAACTGTGAAATGTCAGAAAACGTGTTCATTCACTTAAACATCTCGTCACCAGACACAGATGGTAATGAAACTGTTGTATACTCCGGTTTTTGCAATGTTAAAGTTGTAGATAGCACTGATATTAATATCCGATATGGTTCACCAGACAGTTGCTCTATTGGTGACAATATACCTGTTATCTTGACCGAAGCTAATCAGATAACTTTTCCTGGATACAACGATCCTCAAGTTTGGATAGACCCAGCTCGTAGTCCTTATGTTTACAACCGATGTACTTCACCACCACAAGAATCCTATACCATCCATGAATCTCATGACAACCATATCACCATCGCACAACACAACACATATATAACCCAGAATGTGTATAATTATAACGAAGCGATCCGTTACTCTCCTGTCAGTGATGAACAGAAGACAGTCAAGAAGTTGCAGGAAAATGGGCAAAATTTGGATGGATACAACATGTATGAGGAAGATGAGTTTCAATGTGGTGTCTTCCTCTCTCAGCTGTCGGAAGAGATCATAAATGAGAAAGAGACTAGAGCTAGAGATGAGAGGAAGTTTGTTGGTCTACAGACGGATAATGAAGCTCTAAAGCAGCTGATGTCTTCTGACATACAGTCGGTATCACGGCAACAGAAGACAATCCTGTTCTTAGGCCATGATGTAGAGTCCGGTCAGACAGTACAGAATATTGCCATCAATGATCCTTCTTTGGAGTGTGTAGAATCTGGTAATGTGGAGAGTGAAATAGTTATTGAAGACTCTTTGTCAACAACGCCACGTCCTAAAAAATACCAATGCAATAAATGTAAGCAGATATTTGATCAACTGTCCGCGTTCAAACAACATATGGTCGGCAGCCACCGGTTGTCAAACTTGTACGACATCTCAAGAAGCGTCAAGTTCATGTGCACTGACTGCGGAAAAAGCCTGAAAAATCAAAAGAAGTTTGAGCAACACTGTCTCGGTCACGGCGACCCGGATTTGGAATGTAACAAGTGCCATAAAGTCTTCGCTTCAAAATTTACTTTACGCAATCACCGTAAGATACATTTTCGCAAGTTCCCTTGCAACTGTTGTTCTAAGACTTTTTCAACGGCTTCAGAATTACAAGATCATTTCGGTAAATCTCACCGCACTATTATGTGTGAATCTTGTCCGTTTGTTTGTGAGTCTTTGTCTGATTTGAGGGCACATCGAGAGGTCCATAAGACGTCTACAAATTCGTCTAAAAACTCCAGCGAGTCTGACTTCGGTGAGGGTTTTTTTGAGGAGATGGTCAGTGACATATCGATGTCGGATGACGTGAAGCATGAGGCTGAGGATCGGGAGCAGACAGCAGACTCGGTCATCGCGAAGGTCATGTCCAACAAGATATTTCAAGATCCGAAGAAGAATAAGAAACAGAGAAGGTATAACAAGACCTGTGAAGTATGTCTCAAGAAGTTCGACCGGATCGGAGACCTTAAAAGGCACCTAATCGAGCACGTTATAAGGAGTACCCTGGCGAAGAACCCAGTGAACAAGTTCGGGGTCCTGAACATCCGCTGCGAGATCTGCCAAGAGAAGGTATTTACAAAGGTCGATAGATACAAAGCCCATTTGAGGGAACACGCGAAATTGACACTTTACAAATGCACCTTTTGCGACAAATCATTCAGCGACTCTAGCAACTTCTCAAAGCACAAGAAAATCCATGGCACCACGTACTTCCAATGCGACATGTGCCAACGTAAATTCAACTCTAAGAAGATGATCACACAGCACATGGAATACCACAATAAAAATCGGCCGATCAAGTGTCGTTTTTGCGACAAAGTCTTCCATTTTGAGTCTATGCTAAACAAACACATCAAATGCTCTCATTCTAAAGAGACTACCAGCAAATTCAGGTGCAGATTTTGCTGTAACTACTTCCGAAGTTTGAAGGAAAAATGGGACCATGAATGGAAGGTTCATAACGTTCGGAAGGTGATTGTGGATTGCCTAGTCTGTGGGTCAAGGTTCAGGAAGTATGCGGAGCTAAAAAGACATTGTACTGAGGAACATGACACTATCATACCACCAGCAAAGAGGTTACTGCGGTGGAGGCTGAAAAAGAAATTGAAAATGGTAGAAGTGTGTAAACACGGCGCCTGTACACAAGCGGTGTTCTCGCGCATGACCTTGGGCGGCGCGCATGCGCGGTGTCGCGGCCCGCCGACCCATCCAGCCACTTCGGCGGATCTCGGCGCCACAGTCCGCGACTACGCTCCGCCGCGGCAGCGTCTCACACCGCGACCGCGGGGAAACGCGAGCGCGTGA
- Protein Sequence
- MEGEECDVNVEGPYPILFIPKVCTALETNCEMSENVFIHLNISSPDTDGNETVVYSGFCNVKVVDSTDINIRYGSPDSCSIGDNIPVILTEANQITFPGYNDPQVWIDPARSPYVYNRCTSPPQESYTIHESHDNHITIAQHNTYITQNVYNYNEAIRYSPVSDEQKTVKKLQENGQNLDGYNMYEEDEFQCGVFLSQLSEEIINEKETRARDERKFVGLQTDNEALKQLMSSDIQSVSRQQKTILFLGHDVESGQTVQNIAINDPSLECVESGNVESEIVIEDSLSTTPRPKKYQCNKCKQIFDQLSAFKQHMVGSHRLSNLYDISRSVKFMCTDCGKSLKNQKKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHRKIHFRKFPCNCCSKTFSTASELQDHFGKSHRTIMCESCPFVCESLSDLRAHREVHKTSTNSSKNSSESDFGEGFFEEMVSDISMSDDVKHEAEDREQTADSVIAKVMSNKIFQDPKKNKKQRRYNKTCEVCLKKFDRIGDLKRHLIEHVIRSTLAKNPVNKFGVLNIRCEICQEKVFTKVDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGTTYFQCDMCQRKFNSKKMITQHMEYHNKNRPIKCRFCDKVFHFESMLNKHIKCSHSKETTSKFRCRFCCNYFRSLKEKWDHEWKVHNVRKVIVDCLVCGSRFRKYAELKRHCTEEHDTIIPPAKRLLRWRLKKKLKMVEVCKHGACTQAVFSRMTLGGAHARCRGPPTHPATSADLGATVRDYAPPRQRLTPRPRGNASA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017614;
- 90% Identity
- -
- 80% Identity
- -