Clig005751.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990978.1:6057448-6070413[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6e-05 0.0056 17.8 0.9 1 23 268 290 268 290 0.99 2 13 0.052 4.9 8.5 4.1 1 23 298 321 298 321 0.94 3 13 0.75 70 4.9 0.4 1 23 325 348 325 348 0.90 4 13 0.01 0.96 10.7 4.1 1 23 423 445 423 445 0.99 5 13 0.00013 0.012 16.7 2.6 2 23 454 476 453 476 0.96 6 13 2.1 1.9e+02 3.5 6.6 1 23 480 502 480 502 0.98 7 13 0.00052 0.049 14.8 1.8 1 23 507 530 507 530 0.97 8 13 1.1 99 4.4 2.0 1 23 534 557 534 557 0.78 9 13 2.6 2.4e+02 3.2 0.0 3 20 578 595 576 597 0.89 10 13 0.4 38 5.7 0.0 2 23 644 666 644 666 0.89 11 13 7.7e-05 0.0072 17.4 1.5 1 23 675 697 675 697 0.98 12 13 0.00076 0.072 14.3 0.2 1 23 703 725 703 725 0.96 13 13 1.1e-06 0.0001 23.2 3.3 1 23 731 754 731 754 0.98
Sequence Information
- Coding Sequence
- ATGTACGATCTCAAAGCATGTCTGGTATGTTTCAACACCGATGTTAAATTATTTAACATGAACAGTGGACAATTACGGCGTGAATTCCAGTTGATTTCAGGCATTCAGATATCCCATGGAAGTGGAATGCCAGATTATTTATGTTTTCAGTGCTCAGCATTGGTTAAAAAATTTAAAAGATTTCGCGATAGATGCCACCGTGCTCAATATGCTTTAAAAGAAATTTTAAACAGAAACAAAAAGATTAACAAATCACATCTACAAGATATTAATCCTCATCTCCTGGGCAATATGCAACCTCTATCATTTATGAAATTGGAAAAAATACACTATGAACAAATGAAGTTTCAGTTGAAAAAACCTAACTGCATTGATCTTAGTAGTTCATCTAAAGATGTCATCCTAATATCTCATTGGAGCACCCTCACGGCTGAAGATACTTTTGATGGAATAACAAATTTAAATAATAGAATAGAATTCAGTGAACAAAATATTAAAAGTGATGTTGACACATTACAAAATGAACAATATGAACCGACCAAGAATGAGTCTGAAGACCTTATGTATCAAACTACAGCTGATTCTGAAATAGCAAACTCATTTCTAGATAATAACAACATTCATAGTGATATCAATGCAGATTTAGATGATCCAGAATTATCTAACTTGTCTTGTAAGGTCGAGAATACAGATGAAGTTGATGGGTCAAATATGGATGAAGAATATGCTACAGTGGTTTCGATATCTGTGAAAGAGGCTAAAGCAGCTATAGAAGTGTACAAAATGTTCACTACTGGTAAATTCCGCTGCGAGATATGTAATAAGGCTTACAACAATGACAAACGTTTGACGGTACATTTACGTATGCATGACAAGCACATCAGTGGCTCCTTTCACTGTGAACTTTGTCAGTACTACTATAAAACCGAGTTTCTATTAAAAACTCACATGACAGAAAAGCATCTGTTTAAATACTTATGTAGGAAATGTCCAGAAGTTAGTTTTGATAGATCATCAGCCAAACAACATTACATTTGGACTCATTTACAGAAGGGAAACAAAAAAGATGCTAACTGGTATGAATCTCGACCAAAATGGTTGAACAGCAGAGGCGGTAAGAGGATAAAAGGGGTGGTAACCCTGAAGCCAGTGAGAAAACTAAGCAAATTACCTGAAGACTTCCTCATATACTCCCCTATCAAACATGAAGAGCAGTACACATTGGTGCAAGACAGGAAGAAGTCCAGGAATTACCAGGAGGCACAGTACCAATGTCACCTGTGTTACCGGGGCTTCAGGCTTATGGTGACTTACGTAAAGCATATGAAGAAACATGACCCAGATCATTCGGGTCAAATACAATGTGATATTTGTAAGTTACACTTTAAGGACCAGAGGAAGTTATACAAGCATATGAACATTACTCACCTGTTCAAATACTCATGTCAATTGTGCAGCTATGTGTGCTACAATAGAGGACATGCCCATATGCACTACAGATGGCATAAAAATGTTACGTACGACTGTCCACATTGTGATAAGCAGTTCATGAAGGCGTCAACGCGGCTGAGCCACATAAGAATAAAGCATCCGTCCATGTATTTATGTAACTTGTGCGGACACAGCTTCGTGAGCGACACCGGACTGTACTGTCACAAGCAGATAGCGCACACGCAAGAGGAGATAGAGTTAAGCAACAATATGGAGGTAGACACAACAGACCCGCTCTACTGCATCGACTGTAACCTGCAGTTTGTGACGGCCGCCGCCTTCGCGACACACCTCGGTAGCTCGTACAAACACGCCACTACCAATGTTTCCATAAAGCCGAGTCGCAAGTCTAAGAAGGAGGAGAGTACCCGCGGGCGCGGCCGGCCTCGCCGCGGCGCCTGCTCCGAGATCGTCAACAACGGCAGCACCACCTCCAATGTCTGCGAAGTGTGCGGCAAGTTCCTGGCCAACGACGTGCAGGCGCGCAAGCACTACGAGGCGGAGCACCCCGACACGGAGTACCTCCGCCGCTACATGTGCGACGTCTGCGGACACACCACCAGGCTATACACGAATCTCCTAGTACACATGCGCACACATACAAACGAAAAACCGTACGAGTGCCCGCTTTGTGACCGCCGGTTCAACATGCCCAGCAGTAGAGACAGGCATCTTGTTGTCCACACGGGTGAAAAGCGATACCAGTGTCTACACTGCAATCGCCGCTTCACGCAGAGCAGCTCCTTAAAGCTACACATACAGACTGTGCACCTCAAGATACCTTACGCGCCCTGGAGCAAGAAGAACAGGAAACGACGCAAGGAACTGGGAGCTGCTGGTGTGACGACCCCTATTTTGAACACATACGAAGCACCCGGAGACTATCTCAACGCATACATGATTCAGCTGCCAATGTAA
- Protein Sequence
- MYDLKACLVCFNTDVKLFNMNSGQLRREFQLISGIQISHGSGMPDYLCFQCSALVKKFKRFRDRCHRAQYALKEILNRNKKINKSHLQDINPHLLGNMQPLSFMKLEKIHYEQMKFQLKKPNCIDLSSSSKDVILISHWSTLTAEDTFDGITNLNNRIEFSEQNIKSDVDTLQNEQYEPTKNESEDLMYQTTADSEIANSFLDNNNIHSDINADLDDPELSNLSCKVENTDEVDGSNMDEEYATVVSISVKEAKAAIEVYKMFTTGKFRCEICNKAYNNDKRLTVHLRMHDKHISGSFHCELCQYYYKTEFLLKTHMTEKHLFKYLCRKCPEVSFDRSSAKQHYIWTHLQKGNKKDANWYESRPKWLNSRGGKRIKGVVTLKPVRKLSKLPEDFLIYSPIKHEEQYTLVQDRKKSRNYQEAQYQCHLCYRGFRLMVTYVKHMKKHDPDHSGQIQCDICKLHFKDQRKLYKHMNITHLFKYSCQLCSYVCYNRGHAHMHYRWHKNVTYDCPHCDKQFMKASTRLSHIRIKHPSMYLCNLCGHSFVSDTGLYCHKQIAHTQEEIELSNNMEVDTTDPLYCIDCNLQFVTAAAFATHLGSSYKHATTNVSIKPSRKSKKEESTRGRGRPRRGACSEIVNNGSTTSNVCEVCGKFLANDVQARKHYEAEHPDTEYLRRYMCDVCGHTTRLYTNLLVHMRTHTNEKPYECPLCDRRFNMPSSRDRHLVVHTGEKRYQCLHCNRRFTQSSSLKLHIQTVHLKIPYAPWSKKNRKRRKELGAAGVTTPILNTYEAPGDYLNAYMIQLPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017643;
- 90% Identity
- iTF_00384040;
- 80% Identity
- -