Clig016648.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990962.1:4754632-4759706[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00072 0.068 14.4 0.1 3 23 172 192 170 192 0.96 2 11 0.48 45 5.5 0.8 2 23 197 218 197 218 0.96 3 11 0.0046 0.43 11.8 8.1 2 23 225 247 224 247 0.97 4 11 0.0046 0.43 11.8 1.8 2 23 256 278 255 278 0.94 5 11 4.9e-05 0.0046 18.0 2.4 1 23 283 305 283 305 0.97 6 11 0.0011 0.1 13.8 3.3 1 23 311 334 311 334 0.96 7 11 1.4 1.3e+02 4.0 2.6 2 19 340 357 339 360 0.82 8 11 0.017 1.6 10.0 0.0 3 23 366 386 364 386 0.95 9 11 0.00017 0.016 16.3 0.1 1 23 392 414 392 414 0.98 10 11 0.00024 0.022 15.9 0.4 2 23 421 442 420 442 0.98 11 11 2.8e-07 2.7e-05 25.1 1.6 1 23 448 470 448 470 0.98
Sequence Information
- Coding Sequence
- ATGGAGATGTGTAGAGTATGTTTATCAACAGAAAAACAGATGCTTCCATTGGATGAATCTTTTGTTAATAACTATAACATATTAACAAATCTGAACGTAACTTTACTGGATGGTATGCCACAATATTCATGTGTAACATGTTTAGACTCGGTAAACTGTTACATATCATTCAGAGAAAAATCAATAACATCAGAATCCACTCTGAGGGAGATTATTTATTCTGATGTTAAAGCTGAAAATAAAACACATGCCCTGAAAATTGTCAAAAATCCTTCAATTTATGATAATAGTGAAGACTTGCTGGGTATTAAGTCAGAAATAAAACTAGAAAATGATGATGATACTACAGACAATTTTGATGTAGTATTTGATACATATGACGAAGATATAAAAAACATAATAATTGTTGATAAGAAGGAAGATGATGTGACACCAAAGATCACTAAAAAGAGAAAGTATAAAAAGCACACACTGAAGGCGAACTTACCAACTGTGATTGAAGATGGGTGGTTCTGTGGTATATGCCCAAAGACATTTGAGGAAAAAAGTGTCCTGAGCAACCATTTGGATAGCCATAAGAATGACAGGCAGTGTAAGCTTTGCAGAGAGCAACTAAACAGCTTCTCCCAGCTGCTTGGTCACAGACTGTTACATGTCCCATTGAAACAAAACAAATGTCACATTTGTGAAAAAAGATTTAAATCTTGTTTATACCTGGAGCATCATTATAGGAATATGCACATTGAAGGAGATGATAGAAAACTGTCTTGCAATTATTGTTCAACAACATGTGATACACCAAAAAAACTTAGCAGTCACATACTACAGGTGCATTCTAGTAAAACATATATTTGTGACATCTGTTCAAAATTTTTCCAAAGCAAAACCAGTTTGAAGTCACATATAAAATTCCACAGTAAGAATAAAGCTTATGTTTGTGACATGTGTGGTTTTTCATGTAAACATAGTGGTGGACTGAAGGACCATAAAATAAGAAGGCATTCACTCAAAAAAGTGTACTGTAAACAATGTAAGCGGCCTTTCGTAAGTCAAGAGGAACATGATAGACATAAATGTTCATTTAGGACAATTATATGCCCCGTTTGTGGACTGCAGCTGACTGGAAATGCCAGACTATCAAGGCACATGGTAATTCACAGCAGCATTCCAAAGTATGAATGTACGAGATGTCCAGCTAAGTACAAAACAAAGGGTGCTCTGATCGCACATCTGGACCGGCATGACGGCAACCGCACCAAACAGTGCGAATACTGCCCCGCTAAGTTTTACACGGCCACAGTTCTCATCAAACATCGTCGCATACATACAGGTGAAAAACCTTATGTGTGTAAGGTTTGTAATAAAGGGTTTACAGGCAACCACAACCTCAAAGTGCATATGAAAGTACATGGAGAGTATTTGATTGTTAAGAAGAATAGTGAACCAGAAGATTTAACTGATAATGTTACCAAGTGA
- Protein Sequence
- MEMCRVCLSTEKQMLPLDESFVNNYNILTNLNVTLLDGMPQYSCVTCLDSVNCYISFREKSITSESTLREIIYSDVKAENKTHALKIVKNPSIYDNSEDLLGIKSEIKLENDDDTTDNFDVVFDTYDEDIKNIIIVDKKEDDVTPKITKKRKYKKHTLKANLPTVIEDGWFCGICPKTFEEKSVLSNHLDSHKNDRQCKLCREQLNSFSQLLGHRLLHVPLKQNKCHICEKRFKSCLYLEHHYRNMHIEGDDRKLSCNYCSTTCDTPKKLSSHILQVHSSKTYICDICSKFFQSKTSLKSHIKFHSKNKAYVCDMCGFSCKHSGGLKDHKIRRHSLKKVYCKQCKRPFVSQEEHDRHKCSFRTIICPVCGLQLTGNARLSRHMVIHSSIPKYECTRCPAKYKTKGALIAHLDRHDGNRTKQCEYCPAKFYTATVLIKHRRIHTGEKPYVCKVCNKGFTGNHNLKVHMKVHGEYLIVKKNSEPEDLTDNVTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383996;
- 90% Identity
- iTF_00383996;
- 80% Identity
- -