Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990983.1:2398151-2401876[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0038 0.36 12.1 0.6 1 23 249 271 249 271 0.96

2 10 4.8 4.5e+02 2.3 0.1 3 23 295 316 293 316 0.91

3 10 0.0011 0.099 13.8 1.6 2 23 338 359 337 359 0.95

4 10 0.027 2.5 9.4 1.7 2 23 364 385 363 385 0.96

5 10 0.00033 0.031 15.4 2.3 1 23 392 415 392 415 0.90

6 10 0.055 5.2 8.4 0.8 1 23 421 444 421 444 0.94

7 10 0.00065 0.061 14.5 2.4 1 23 450 473 450 473 0.97

8 10 2.9e-05 0.0027 18.7 1.7 1 23 479 501 479 501 0.98

9 10 1.8e-06 0.00017 22.5 0.7 1 23 507 529 507 529 0.98

10 10 1.7e-06 0.00016 22.6 1.5 1 23 535 558 535 558 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0038	0.36	12.1	0.6	1	23	249	271	249	271	0.96
2	10	4.8	4.5e+02	2.3	0.1	3	23	295	316	293	316	0.91
3	10	0.0011	0.099	13.8	1.6	2	23	338	359	337	359	0.95
4	10	0.027	2.5	9.4	1.7	2	23	364	385	363	385	0.96
5	10	0.00033	0.031	15.4	2.3	1	23	392	415	392	415	0.90
6	10	0.055	5.2	8.4	0.8	1	23	421	444	421	444	0.94
7	10	0.00065	0.061	14.5	2.4	1	23	450	473	450	473	0.97
8	10	2.9e-05	0.0027	18.7	1.7	1	23	479	501	479	501	0.98
9	10	1.8e-06	0.00017	22.5	0.7	1	23	507	529	507	529	0.98
10	10	1.7e-06	0.00016	22.6	1.5	1	23	535	558	535	558	0.98

Sequence Information

Coding Sequence: ATGGGCACGAATAGCCGTAAGGGTCCCATTGTGGATCCTGGCCTGTGCAGATGCTGCGGCGCTATAAAGAAATGTCGCTTGTTAAATATAGAATACGAGTGGCTTGGACAAAGAGAAGTTTATTCAGAAATGTTCGTCGATTGCTTTGGTTTACTCTTGTCTCACTTGGAGGGCGAGGAGTCGGAGCGCCTGATCTGCGCGACGTGCGTGGTGCGGCTGAGGGACGCGCGCGCGTTCCGACTACAAGTCCTGCAGTGCGAGGAGAAACTGCTACACGCCAACATACTAGTTCACGAAGATGGCCAAACAGATGTTATGAAGAATGAAATGGAAGTGAAAGTTGAACAAGAAGAACCAGTAGCAGACGCACAGGACTTACAGCATGTTGCGGTTCCTGACCATCTGGAGACTGTGGATGATGGAGTAGACCATGTGGACGACGATGTCGATAGCATAAAAAGCGAGCCAATGACAAAACCTATTAAGAAATCGTCAAAGAAAAAGAAAGTAAAATTAAAATCGAAAACTACTAAACGCAAGAAGACCGCCAACAGTGAATGCCCTGAGAAGACTGGCAAGAGGATCAGAAGCCAAGAAGTATCGGATGTTGGGATTAATGAATTCAATTTCCCGCCACAACAAGCACCGAAGAAACAAATCGATACTGATCAAAAATCGTTTGCCAACACTATTACTGTAGTCGAGAACTCATTTGTATGTCCATTCGATACATCCTTTAGCGATTACTATTGCATTTACTGCCGCGAAGTGTTCACAGACCCTAACAGGCTAAGAGAACACACACTGACCCATGACCCGACAACATTCAAAGACTGCATCGCAAATAAAAAACTACTCTTAGTCGATATTTTCCGAATCGATTGTAGATTATGTCCGATAAGAATCGATGACATCGATTCCTTCAAAAGTCACCTCACTAACACGCACGGGAAGACACTATACGATATGTCAAACGAATTTTTGAAGTTTCGTTTGACAGTCAACAATTTGACATGTACGGAGTGTAATAGTGCGTTTAGTTTTTTCCACGCTTTAAAGAAACATATGGCCGAACATTTCGGCACTTGTATCTGTGATATTTGTGGCGCGCATTATTTCGAAGAACGCATGCTTATTTTACATCAAAAAACCCACCAGAAAGTTGAAGAATCTTTTCCGTGCAAAGACTGTGGGAAAGTGTTCAAATCGAAACATAGTCGGTATTTACACGAAGCAAAATTACACAAGAAAGAACCGGCGTACCAATGCTATAAGTGTGATGAAGTGTTATTTTCCTATTCGCTAAGGTATCGCCACATGATCGATGTGCACGGCGAACAGAGAATGTTTCCGTGCGAACATTGTGAAAGGGCATATGACAGCAGAAAATCCCTCCGAGAACATAACAGACGTTACCATTTAAAAATATTCAAACACCAATGCGATTTGTGCGATAAGAGGTTCTATTTGCCCTCCCGTTTGAAGGAACATATGGCAACACACACGGGCGAGAGGAATTTCCGGTGCGAGTTTTGTGGGAAAAGCTACCCTAGGTTAAGGGGGCTTAAGGTGCATATGCAATCGCACAGCAACGAGAAAAAGTTCAGGTGTGTTATGTGCAATGCGTCGTTCACGCAAAACGTTAATTTGAAAAATCACATGAAACGCCAGCATCAGAGTTTGGATATGGAGGACGAGTACCCCGAATAG
Protein Sequence: MGTNSRKGPIVDPGLCRCCGAIKKCRLLNIEYEWLGQREVYSEMFVDCFGLLLSHLEGEESERLICATCVVRLRDARAFRLQVLQCEEKLLHANILVHEDGQTDVMKNEMEVKVEQEEPVADAQDLQHVAVPDHLETVDDGVDHVDDDVDSIKSEPMTKPIKKSSKKKKVKLKSKTTKRKKTANSECPEKTGKRIRSQEVSDVGINEFNFPPQQAPKKQIDTDQKSFANTITVVENSFVCPFDTSFSDYYCIYCREVFTDPNRLREHTLTHDPTTFKDCIANKKLLLVDIFRIDCRLCPIRIDDIDSFKSHLTNTHGKTLYDMSNEFLKFRLTVNNLTCTECNSAFSFFHALKKHMAEHFGTCICDICGAHYFEERMLILHQKTHQKVEESFPCKDCGKVFKSKHSRYLHEAKLHKKEPAYQCYKCDEVLFSYSLRYRHMIDVHGEQRMFPCEHCERAYDSRKSLREHNRRYHLKIFKHQCDLCDKRFYLPSRLKEHMATHTGERNFRCEFCGKSYPRLRGLKVHMQSHSNEKKFRCVMCNASFTQNVNLKNHMKRQHQSLDMEDEYPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00001454;
90% Identity: -
80% Identity: -