Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990969.1:11503306-11516086[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00012 0.011 16.8 1.6 1 23 336 358 336 358 0.97

2 11 0.047 4.4 8.6 0.2 2 23 366 388 366 388 0.92

3 11 0.0018 0.17 13.1 0.5 1 23 392 414 392 414 0.97

4 11 0.008 0.75 11.1 1.0 1 23 419 442 419 442 0.96

5 11 0.00069 0.064 14.4 1.2 1 23 457 479 457 479 0.98

6 11 0.059 5.6 8.3 0.1 1 22 491 512 491 516 0.92

7 11 0.57 54 5.2 5.0 3 23 536 557 535 557 0.94

8 11 0.0027 0.26 12.5 0.7 2 23 591 612 591 612 0.96

9 11 5.3e-06 0.0005 21.1 0.4 2 23 618 639 617 639 0.97

10 11 2.4e-07 2.3e-05 25.3 0.4 1 23 645 667 645 667 0.99

11 11 1.8e-06 0.00017 22.6 2.2 1 23 673 696 673 696 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00012	0.011	16.8	1.6	1	23	336	358	336	358	0.97
2	11	0.047	4.4	8.6	0.2	2	23	366	388	366	388	0.92
3	11	0.0018	0.17	13.1	0.5	1	23	392	414	392	414	0.97
4	11	0.008	0.75	11.1	1.0	1	23	419	442	419	442	0.96
5	11	0.00069	0.064	14.4	1.2	1	23	457	479	457	479	0.98
6	11	0.059	5.6	8.3	0.1	1	22	491	512	491	516	0.92
7	11	0.57	54	5.2	5.0	3	23	536	557	535	557	0.94
8	11	0.0027	0.26	12.5	0.7	2	23	591	612	591	612	0.96
9	11	5.3e-06	0.0005	21.1	0.4	2	23	618	639	617	639	0.97
10	11	2.4e-07	2.3e-05	25.3	0.4	1	23	645	667	645	667	0.99
11	11	1.8e-06	0.00017	22.6	2.2	1	23	673	696	673	696	0.98

Sequence Information

Coding Sequence: ATGGTTTCCTATTGCTGTGTTAAAGGTTGTGGTAACAACAGCAACAATAAGAAGAAAGATCCCACGTCTCTAATATCATTTCATGCATTTCCTTCAAATTGGGAGCTAAAAAGTAAATGGTTGAGAGCTATAGGCCGTCCTAACTGGGTACCTCCCAACTATGCCCGGATATGTAGCGCACATTTTGTATATGATCAGATCAACTATGATGGCTGCCGAAAACGAATCAAAGATGATGCTTTACCTGTTAATTTATTACCACTGAACTCCAACTTTGAGGCCTCCAATGTCGAGGCATGCAGGGTATGCTTGGCCACCGATCTTGAATTATTTAGCCTGCAGGACACACAGCTTGGAATATGTATGGAATCCGTTGCTGGAAGTAATGCAAACATCAATATAGATGGTCTTCCAAAATTCATCTGTTACCAATGTAAACCAAGCCTTATAAAATGCAGTGAACTCATTGATAAATGCACAATATCTCAGGCAACACTACTGGATATATTTGCTAAGAATGGAGAGGTAACAAAAAGTCTTATCAAAGAACATAATAAACCTGAAATAAAATTACTATCAAATAATAGTGGTATTACTTCACATTTGAATACAACAAAATCAGAATCAAATGATAGTGATGTCACTTATTTCAAAAATGAAAACCATAGAAGCGTAAAAATTGAAAAGAATGGATGTAAAATTGAAACAAATGAACCTACTTTAACAAATAATGACGAGACTAACTCTCAAATGGAACATGATATTACAGATGATTATTTCGGTGAAGATTCAAGTCCAAATCAAGGTCAAGGTCAGGATCAACAAATATATGAGAGTAAAGTAAAACATATAAGAAAGAAAGTAGGAAGAAAGAAAGGCGGTGGATTGACTCCAGATGAAACGGATATGCTGAAGTATTTCAATATCGTCGAGCTGTCGCTCCAGGAACAAATACGGGAATGGACAAAAAGCACCGCCCGCCGCCGTCTCACGAGCGAAACTGTGTACCAGTGTGAAGTGTGCAACAAAATGTTTGCGAATGCCGACTCCTACCACGTTCATACTACTTACCACGATGCCAGTCAAGGGCAAGCAGAATGCCCAATATGCAAACTTCGCTTCAAAACCACAGCGCTGGCGGCATCTCACTCAAAACGCGCTCACAGCAAGAAATTCTTCTGCAAAATGTGTCCCAAAGCGTTTAATAATGTTGGTGTAGCCAAAAAACATCAGCGCTGGCATTCCGGTTACCTGTACAAGTGCGGCTGGTGTCCGTTCCGCACGAGGCACGAGTCGTCGCTGGGCGTGCACCGGCGGGGCACGCACGGGCACGCCCGGCCGGGCGGCACGCGCGTGCCCCGGCAAGCGCACACGTGCCCCGTGTGTGCGCGCGCCTTCACTAGTGCACGCGGACTCGACCTACATATGCACAAGCACAGGATGCTTAACGACAAAGATATCACCAAGAAGTATTCTTGTGAACAGTGCGATATAGGATTTGCATCCGAAAACGCACGACGTGTGCATTTACTTACCTCCATACAGCATGTGAACAAACCGGGTGTTGGTGACGCAAATATGAAAGACTCAGATCTACGGAACTGTTGCAAGAAATGCGGTAAAGACTGTGGGTCCTTCAAGGATCTGGTGCAGCACAATAGGCTGGACCATAGCCGTGCCAGACGCTCCAGTCATCCGTGGAGAGGAGACGCGCCTTACCCTATATCCTGTGAACTTGAAGTGGACACCTACCAACCGGTCATTACTGCCGTTTGTGATATTTGCGGCAAAGGGTATCAGAACACAACAAAGCTACGCCTACACAAGCTGCGTCACCGCAGTCCTACCGTACGTTGTCAAGTGTGTCCGCGGATGTTCTACGACAAGTACGCGCTCATGCGGCATGCGCGCACGCACAGCGCAGACAAACCGTACCAGTGCCGCATCTGTGGGAAAGCGTTCAAGGTGCGGAGTAACTTGGACAGGCACGCGCGAGTACATACAGATGCTGCTCCATACGAATGCACGATGTGTGGGAAAAAATTCAAACACTCGTCAAGCGTGAACCTGCACGTGCGCACCGTGCACTACAAATTGCCACAACCTCCTAGAAAGAAGAGAAGCAAGTCGGCAAAGGATGAAAACACATAG
Protein Sequence: MVSYCCVKGCGNNSNNKKKDPTSLISFHAFPSNWELKSKWLRAIGRPNWVPPNYARICSAHFVYDQINYDGCRKRIKDDALPVNLLPLNSNFEASNVEACRVCLATDLELFSLQDTQLGICMESVAGSNANINIDGLPKFICYQCKPSLIKCSELIDKCTISQATLLDIFAKNGEVTKSLIKEHNKPEIKLLSNNSGITSHLNTTKSESNDSDVTYFKNENHRSVKIEKNGCKIETNEPTLTNNDETNSQMEHDITDDYFGEDSSPNQGQGQDQQIYESKVKHIRKKVGRKKGGGLTPDETDMLKYFNIVELSLQEQIREWTKSTARRRLTSETVYQCEVCNKMFANADSYHVHTTYHDASQGQAECPICKLRFKTTALAASHSKRAHSKKFFCKMCPKAFNNVGVAKKHQRWHSGYLYKCGWCPFRTRHESSLGVHRRGTHGHARPGGTRVPRQAHTCPVCARAFTSARGLDLHMHKHRMLNDKDITKKYSCEQCDIGFASENARRVHLLTSIQHVNKPGVGDANMKDSDLRNCCKKCGKDCGSFKDLVQHNRLDHSRARRSSHPWRGDAPYPISCELEVDTYQPVITAVCDICGKGYQNTTKLRLHKLRHRSPTVRCQVCPRMFYDKYALMRHARTHSADKPYQCRICGKAFKVRSNLDRHARVHTDAAPYECTMCGKKFKHSSSVNLHVRTVHYKLPQPPRKKRSKSAKDENT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00383725;
90% Identity: iTF_00383725;
80% Identity: iTF_00383725;