Clig011425.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990981.1:889428-892517[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.01 0.94 10.8 1.7 1 23 273 296 273 296 0.94 2 18 7.4e-05 0.0069 17.5 4.7 1 23 301 323 301 323 0.98 3 18 0.011 1.1 10.6 1.2 1 23 353 376 353 376 0.95 4 18 1.5 1.4e+02 3.9 0.8 2 21 386 405 385 406 0.92 5 18 0.00051 0.048 14.8 1.0 2 23 438 460 437 460 0.96 6 18 0.00097 0.091 14.0 1.2 1 23 466 489 466 489 0.93 7 18 0.024 2.3 9.6 0.3 3 21 494 512 492 513 0.94 8 18 0.0066 0.62 11.3 0.3 1 23 521 544 521 544 0.96 9 18 4.7 4.4e+02 2.3 0.3 1 23 549 572 549 572 0.92 10 18 0.0044 0.42 11.9 0.3 2 23 585 606 584 606 0.96 11 18 0.18 17 6.8 2.6 1 23 612 634 612 634 0.85 12 18 0.0025 0.23 12.7 2.7 1 23 670 692 670 692 0.97 13 18 0.0008 0.075 14.2 0.2 3 23 698 718 697 718 0.94 14 18 0.0014 0.13 13.5 1.3 3 23 738 759 736 759 0.96 15 18 0.0008 0.075 14.2 2.8 1 23 765 787 765 787 0.98 16 18 0.0013 0.12 13.5 4.0 2 23 793 814 792 814 0.96 17 18 2.9e-05 0.0027 18.7 2.0 1 23 820 843 820 843 0.97 18 18 5.6 5.2e+02 2.1 2.1 3 23 850 871 850 871 0.96
Sequence Information
- Coding Sequence
- ATGGAGAATACAGAGACTACGGCTAATGATTCCAATAAGTTCAGTTGGATCAAGGAAAAACTGCAGACAGTATGGACATCCGGAAAGTTCTGTGGACTATGTCTGCAGAGCCAGGGCAACTTCTGTTCCGTTGATATGGAGATAATGATTAACAACCAAATATTTTCTAAATGCTTACAAGATATCGTCAACTATGTTTTTAATGATGATATTTCAAACCTGATGTCAAGCTCTCACTTGTGCGAAGGTTGCACGGAGAAGACTATACAGTCTTACATCTTCATTCACAACACAAAACAACTATCAAAAATTCTGCATAACTGTGTCACAGATATCTACTCCAAAGTTATTGATGTCAACGAACAGCTAGATTGTAGCACCAACTATGATAATGCCAATGTTATGATTGTCTTAGAAAATGATACTGAACTTTATCGAAGTATCATTGATGTGAAATTCAGTACTGAAATCGTTCCAACCACAAGACCTATAGCTATGAAGGAAACTGCTCCAGCTCCAACAAACCACTTAGCAAACATAAGTATGAAGGAAATTATATGTCCGACTCAAATAGCACGACAAATAAATAAGGAAGAGGTAAAATCTGTTGAAGTGCCTAAACAAAATCCACAAATAACTGGACTACATACAATAGAAGTTAAAAAGGAGGTCAAAAGTCCAAAAGTAGTCAAAGAAATCAAAGAAAGAAGGACCAAACCTGATAGCGAACCAAATATAACTTTGAAACAAGGTCATATAGTTATTGAGCCTTTGAACTCCGCCAGATCTTCAACGACAGTACCTCGGTACAATACTTATGAATGTTCTCATTGTCCAGATATATTTACTACATATAGATCACTGAAAGAACACGAAAAGGCCAAGCATAAAAAGTCTGTATTCCACTGTAATCTATGTGACAAGACTTACAATACGCAACAATATTTGAATATACACTACAAGACTCATTCAAGAGCTAGATGCAAACTGTGCCAAGTTATACTGCCAGAAGATGAATTAATGGGCCATTTGAAAACAAACCACACTAACTTAGTGCATCCTTGTAAATTTTGTGACTTAGTTTACTATACGCAAGAGTCTTTGGACATACATTTCAAAATTAGTCACTTGGTCAACGATAAAAAGCCCAAATCGCAATGTGTTATGTGCCTTAAGAACTTTGGTGAAGAAGAATATCTTAAAAGCCATAAATGCAAATTTTCATGCTCCGAGTGCTTTGTCATGCCATGCATTCACTATAAGTATTTAGTCTCTTTCAGAGAACAGGTATTAGGTCATGTGAACAAAATGAAATGTACTGATTGTGACTATGTAACCCGTCGGAAGGAACACTTAATTGGGCACGCGAATCGAGAGCATCTGGACCACCATCCGTTTACATGCGCCGATTGTGACCAGCAGTTTTACACCAAGCTGAGTTTGAAGACCCACATAGTGCAATTCCACCAGGAAATATTTTGCCAGTACTGTGATTTCCAATTTAAAGATATTAACACTTTAGAAACCCACAGAAAAGCATGCAAAAATGTCGTACGTGCGTTTTCTTGTACACAGTGTGTTGCTTCCTTTGATACTGATGAAGAGCTGACAAATCATCTAAATTTGAGGCATAGTGATGGAGTTTATGCTTGTAAACTTTGCAAGAGTAGATACCTAACTAGCCTTGAATTAGAAGAGCACCGCGCTAGAGTCCATGGTGGCATTCAATGCAAGAAAAGACGTAAACATATTGAGTGCTCTCTTTGCAATATAATGTTCAAAAACGTGAAGGAGTTACTCCAACATGAGAAATTGCATGACCCTAATGATATTTACCCATGCAAAGAGTGCTCCAAACAATTTAAATCATTAATGAAGTTATACTTTCACAGTCAGAGGCATTATACTAACAGAATAAATTGCTCCGGTTGTAATAGAAAAGTTGCAGCGTCGTTTTACGCGCAACATATAGTCAGGTGTCCTTACAAAAAGAATGTGACTTTGAGCCATGTCTGTGAGGTTTGTGGTAAGGCTTTCCATCTAGAATCTCTACTCCGCTTCCACCAGCGGACCCATATGGACCCTGAGCCGTGCCCTCAATGTGATAAGATCCTCAAGCCGTCTAACCTTAAAAGACATATGGAGCAAGTTCATGGAGATCCTCAAGAAAAATCCAAGAGAGCATACGTCCAGAGTAAACCATCCATTGCGTGTGAGTTATGTGGACACGTAGTAAGAAAGAAATGTGATTTAGAAGCTCATATGAACCGATACCATTTAAAAATCAAGCCTTTTGTCTGTCATATCTGCAGCAAAGACTTTTGCGGTAAAGTACGTCTAAAAGAGCATATAGCTACCCACTCAGACACCAGCTGCTTCTGTTCTATCTGTGGTAATAAATTCGCTAACCGTGTATGCCTGAAAATGCACATCAGAATACATACAGGTGAATATCCTTATTCCTGTGACATTTGCGGACAGAAATTCAGGTCTTCAAGTATGATGAAGAGTCATAGACTCAAGAAACATTTAGAGAAGACTGTTGGCTGCCCGTTATGTGATAGTATGTTCTTCATGGTCAGAGATATGAGGCATCACTTCAAGAGAGTCCACTGGAAGCATAATGATAGGCCATTCAATCCCAGAGAAGTCGAAGAATTGTCTAAAGAATATTATTATCTTTTTGAGGATGGCAGACTGCCGAAAATCTATAAGAATGAATAA
- Protein Sequence
- MENTETTANDSNKFSWIKEKLQTVWTSGKFCGLCLQSQGNFCSVDMEIMINNQIFSKCLQDIVNYVFNDDISNLMSSSHLCEGCTEKTIQSYIFIHNTKQLSKILHNCVTDIYSKVIDVNEQLDCSTNYDNANVMIVLENDTELYRSIIDVKFSTEIVPTTRPIAMKETAPAPTNHLANISMKEIICPTQIARQINKEEVKSVEVPKQNPQITGLHTIEVKKEVKSPKVVKEIKERRTKPDSEPNITLKQGHIVIEPLNSARSSTTVPRYNTYECSHCPDIFTTYRSLKEHEKAKHKKSVFHCNLCDKTYNTQQYLNIHYKTHSRARCKLCQVILPEDELMGHLKTNHTNLVHPCKFCDLVYYTQESLDIHFKISHLVNDKKPKSQCVMCLKNFGEEEYLKSHKCKFSCSECFVMPCIHYKYLVSFREQVLGHVNKMKCTDCDYVTRRKEHLIGHANREHLDHHPFTCADCDQQFYTKLSLKTHIVQFHQEIFCQYCDFQFKDINTLETHRKACKNVVRAFSCTQCVASFDTDEELTNHLNLRHSDGVYACKLCKSRYLTSLELEEHRARVHGGIQCKKRRKHIECSLCNIMFKNVKELLQHEKLHDPNDIYPCKECSKQFKSLMKLYFHSQRHYTNRINCSGCNRKVAASFYAQHIVRCPYKKNVTLSHVCEVCGKAFHLESLLRFHQRTHMDPEPCPQCDKILKPSNLKRHMEQVHGDPQEKSKRAYVQSKPSIACELCGHVVRKKCDLEAHMNRYHLKIKPFVCHICSKDFCGKVRLKEHIATHSDTSCFCSICGNKFANRVCLKMHIRIHTGEYPYSCDICGQKFRSSSMMKSHRLKKHLEKTVGCPLCDSMFFMVRDMRHHFKRVHWKHNDRPFNPREVEELSKEYYYLFEDGRLPKIYKNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017616;
- 90% Identity
- -
- 80% Identity
- -