Clig024050.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990985.1:2858799-2869740[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.019 1.8 9.9 1.1 1 23 242 265 242 265 0.97 2 11 0.0051 0.48 11.7 0.1 1 23 272 294 272 294 0.98 3 11 1.8 1.7e+02 3.7 0.7 1 10 298 307 298 321 0.74 4 11 0.57 54 5.2 2.3 1 23 328 350 328 350 0.82 5 11 1.4e-05 0.0013 19.8 0.8 2 23 355 377 354 377 0.93 6 11 2.2e-05 0.002 19.1 1.0 1 23 383 405 383 405 0.97 7 11 0.011 1.1 10.6 2.0 2 21 417 436 417 441 0.93 8 11 5.5e-05 0.0052 17.9 2.4 1 23 449 472 449 472 0.94 9 11 0.00075 0.07 14.3 0.7 1 23 477 500 477 500 0.97 10 11 6.8e-07 6.4e-05 23.9 3.3 2 23 508 529 507 529 0.97 11 11 9.5e-06 0.0009 20.3 1.4 1 23 535 558 535 558 0.95
Sequence Information
- Coding Sequence
- ATGGAGATTAAACAAGAAGATATAGCTTATAAATTGGTTTGCAATGCGTGTCTGTGCGTTGGAAGAACACTTCAAAAAATCGAAGATGAAAAATGTGTAAATTTTTATTTGAATATTATAAATGAAATACCTCTTATGATAGTCTCGTCTCTAAGCCTGCTAATATGTTGGGAATGCAAGGCTCTGTTAGACAAATCTCTGTCATTTAGACAACAAGTGCAGGATTCTAACAGGATACTACAAACTTATACTAATGAGAATCTTTACGAATATCTTATATCAGATGTAAGCCGACCTCCTCGGCTAAAGGTCCATAACAACAAACATGTCAGTATACCACCACAGGACAAATGTGACAGCTACCCGGAAGTGCCACTATTCTGTGTTAAAGATGAGCTCAAACATGACTGGGAATGTGATCAAGATGAAGACACAAATAATTTTGAAGACGACACACCACTGTCAGACAGTTCAGAAAACACAAAGCATTTAGAATCCGAGCTGCAGAACATAATAAGCTCTATAAACAGTGATGAGAAAAAAACCGACACCAAGAATAAGATCAAGAAGGCCAAAAAGTTGGCCAGAAGCTTAAAAGTGGATAAAAAGACAAAACAGAGCAAGCAGCACAACCAAAAGATTCTTACAATAGAGTTGAGTTACGAAGAAATGCTGCAAGAGAGAAAGAGGGAGTCGACAAGAGAAGTTTATATGAAAGCGGAGTATAAGTGTGAGAGCTGCCTTATAGGGTTCAACTATAACAAGTCTTACTTAGCCCATATGACTTCTAAACATTCACCGGAGCTGGGAGAGTATATCTGTCCCATATGTGAAACTATTATATCTTCGGTTGAATCATTCACTGCGCATTACAAGAGGCATATGAGGAGGTACGAATGCAGTATATGCAAGAAACGAACTTTGGACATGAAGGTAATGCAGCAACATTACTACTCCACCCACGAGATATCGCTGAAGGAATACAAATGCAATCTGTGCGGGAAGATTTCTAATTCCATAGACACGCATCGCTACCACAAAGACACGCACAAAGCGAGAGTTCAGTGCACAGAGTGTGACAAGACGTTCAGACATCGAGCGGGACTTATGAACCATAGACTCGCCGTCCATGAGTACCACAACGCGTTTCCATGCACAGTGTGCGACAAAGTTTTCAGGTGGAAAACCAGCCTCAAGCGCCATCTGGAGAAGCACGAAGTCAAGGGCAAGTCCTCAACAGCAGCGGCGTACTGTTCCATGTGCGACGTCTCCTTTGCATCCATCTGTTCGTATCAGCGCCACATGAAGAACAGTCTCAAACACGTCACGCAGGACCAGCTGAAATTTATATGCGATCACTGCAAAAAAAGGTTCGCAGACAAGACGAAATTACGGGATCATATAGAAGAGAAACATTTACACAAAACTTATCAATGTCACATCTGTCTGAAGCCGTCCAAGAATCGCGTAGGCTTGGATCAACACATACGCAATGTACACAAAGGCAGACCTAATAACAAAATGTGCCATCACTGTGGGAAGGGATTTCCGACGAAGGTGCAGTTAGAGTCTCACATACGCACGCACACCGGTGAGAGGCCGTTCATCTGCGAGTTCTGCCCAACCACCTTCTCGCAGCAGTCCAACTTGTACAAACACAACCGACAGGTACATCTCAATATAAAATCGAAGCGGTACGTCGCGTGTAAGAGGCGGGAAGATAAACCGATCGAGATGCCCGCACTGGATCACACACAACAAATTGACCCATATAGGCCTGTACCAATACTACATTTTAATACTGAGAAAGGATTTGTAATGTAA
- Protein Sequence
- MEIKQEDIAYKLVCNACLCVGRTLQKIEDEKCVNFYLNIINEIPLMIVSSLSLLICWECKALLDKSLSFRQQVQDSNRILQTYTNENLYEYLISDVSRPPRLKVHNNKHVSIPPQDKCDSYPEVPLFCVKDELKHDWECDQDEDTNNFEDDTPLSDSSENTKHLESELQNIISSINSDEKKTDTKNKIKKAKKLARSLKVDKKTKQSKQHNQKILTIELSYEEMLQERKRESTREVYMKAEYKCESCLIGFNYNKSYLAHMTSKHSPELGEYICPICETIISSVESFTAHYKRHMRRYECSICKKRTLDMKVMQQHYYSTHEISLKEYKCNLCGKISNSIDTHRYHKDTHKARVQCTECDKTFRHRAGLMNHRLAVHEYHNAFPCTVCDKVFRWKTSLKRHLEKHEVKGKSSTAAAYCSMCDVSFASICSYQRHMKNSLKHVTQDQLKFICDHCKKRFADKTKLRDHIEEKHLHKTYQCHICLKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTKVQLESHIRTHTGERPFICEFCPTTFSQQSNLYKHNRQVHLNIKSKRYVACKRREDKPIEMPALDHTQQIDPYRPVPILHFNTEKGFVM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377759; iTF_00017594; iTF_00018420;
- 90% Identity
- -
- 80% Identity
- -