Clig011472.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- Zfy1
- Assembly
- GCA_905163465.1
- Location
- LR990981.1:1895907-1898929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0014 0.13 13.5 4.8 1 23 164 187 164 187 0.97 2 19 0.00026 0.025 15.7 0.9 1 23 196 219 196 219 0.96 3 19 0.016 1.5 10.1 0.7 2 23 232 254 232 254 0.97 4 19 0.00053 0.05 14.8 1.1 1 23 263 286 263 286 0.97 5 19 0.0028 0.26 12.5 2.9 1 23 299 322 299 323 0.96 6 19 0.00012 0.011 16.8 0.7 2 23 350 372 349 372 0.97 7 19 0.0012 0.12 13.6 1.2 2 23 382 404 381 404 0.96 8 19 0.073 6.8 8.1 1.7 3 19 410 426 408 429 0.92 9 19 0.00053 0.05 14.8 0.5 2 21 434 453 433 456 0.94 10 19 2.8 2.6e+02 3.1 2.1 3 23 466 487 465 487 0.92 11 19 0.00024 0.023 15.8 3.5 1 23 492 515 492 515 0.94 12 19 0.00012 0.011 16.8 2.0 2 23 527 549 526 549 0.96 13 19 0.14 13 7.2 0.4 1 23 576 599 576 599 0.92 14 19 0.78 73 4.8 0.1 2 23 606 627 605 627 0.89 15 19 0.45 42 5.6 3.0 3 23 634 654 632 654 0.96 16 19 2.7 2.6e+02 3.1 1.4 3 23 662 684 660 684 0.91 17 19 2.2 2.1e+02 3.4 0.5 2 23 692 713 691 713 0.93 18 19 0.017 1.6 10.0 0.1 1 23 720 742 720 742 0.97 19 19 0.075 7 8.0 1.9 1 23 748 771 748 771 0.97
Sequence Information
- Coding Sequence
- ATGGATTTAGATGTTACTGTTAAGGTAGAAAATGTAGAGATAGAAAACGTTAAGATTGAAAACATTAAGGTAGAGAAAGTTGATATGAGGAAAGACCCTACTTCATTTTTACCTGAAGAGCCTATGTCTTATGAAATCAAGAAAAAAAAGAAGAAAAAGAAAAAACAACAGGAAGACCCTTTCAAAGATATAGATGATAAAATAGGTGCTAGAGTTGAGCAAGTAACAGTAATAGATCCTGAAGTTAAAATAAAAGTTGAGAATATTGAAGTGGAATTAGATTTTAATGACTTTGCGGACAGCAGTGGCCTAATGCTTGTAGGTCCTCATTGCGATGATAGTCAAGAGCCCGCAGTCAAAATTGAACAAGATAATCACGAGGCAACCTTACTGACGTTCGAAAGCGTCATCAAAAACAAAGCAAGTCATGAGAGCACTGAAAGGTATCCAAGCAGTGTACCCAACCTACCTTTAAAACCCGCCCCAGTCCACGTATGCAAAGTATGCCACCTTGTCTTCCAATCACCTAAAACGCTTCGCATGCACCAGAAAAGAAAGCACAAGTCCTTCAGAAAATCATTTAAACACATTTGCGACTACTGTGGCATGTCCTATGAAATGAAGAACAGTTTGGTCGCTCATATAAAAAGAAAACACGGACCTAATGCAATGCCCGATGACAGAGAAGAAAGGACTTGTGAGATATGTGCTCTGGTGTTCAAAGGAATGACACGGTTACGAATGCACATGAGAAGAAAACATGGTTACTTCCAAGACTCCTTCCAGCATGTATGTCAAGATTGCGGTTTAACTTATGATAAATACAGGAGTTTAATAGTCCATATACAACGTAAACATTCAAATGAGAATAAGAAGCCTGAAGTGAACCAGTGGTATAATTGCCCATTCTGTGCAAAGATTTTCACAAAACGAGAGACTTATGCCAGGCATGTTCAAAGAAAGCACCATGTATCCGATAGTATAAAACAGGAAACGTTAACTGATAATTACTTGGACAGCTGTAAGAATGAAGAAACTGGTGAAATCACTTGTAAGGAATGCCCGCTAGTCTTTTCTTCTGTCAATTTCTTGAAACTACATATGAGAAGGAAGCATAATGCGTTAAGAGAAGATTTCAGGTTGAAGTGTAGAATTTGTAACTTATCTTACGATAAAATCGAAAGCCTCAAAAGGCACGTGAGAAGAAAACACGATAAAGGTTCTCATTGCGAAGTCTGCAACAAACAGTTTGACACACGCGAGACATATTTGAATCATTCACATATGAAGGTTATAAAGGAATGCAATATCTGTGGATTGATTTTCGCGTCACAAGGCGGTTTAGCGAAACATTTGAGGTGTACACATAAAATGGATACTCCCAAAACAGTCTTCTGCAGTTTGTGTAACGAAGGATTCCACGAAAAACGTCAATTAAAACCGCATTTTATGAAAGTGCATTTAAAAGTGTCTTACACTTGCCGATACTGCAAAAAAGTTTTCAAAGCAAAGGAGAGTTATAGACGGCACATACTATTTAAGCACCCAACTGTAAATCATTTTAATGCTCAGATGCAGAAATGCGAGCAATGTAACGAGACGTTTAAAGACGAATTTGAACTTTGTCGACATGTAAATATGGTTCATGGTCGCCCAGACGATATGGCTAATAATGAAAGAGAAATGTTAGATATTAAGAAAGAAGATGCAGACATAAAAGATTGTTTCCAATGCACCAAGTGCCCGGACTCGTACTTAACATGGGAGCAACTGAAACTACATTACGAAGCAAACCATCACAATATTGAGGAAACTCAATGCCAGATATGTGGGGAAATTCTTCCAGGTAATGAATTACAGAAGCATATAAAAAATCTGCATACAGATACTGAAATGCATTGCAGATACTGTGAATTCAAAACGAATATTAGAGTTAGTTTGACCCAGCATATGTTGAGACATAAAAATGCCGAGACAATACACTGTGACTACGCCGGTTGTAAGTATAAAACGTTCTACGAAGGTGCTATGGAGAAACATAAAAGGAAGCATGCCGATCAAGGAGTCAAACTCCAATGTACACAGTGCCCTTTCCAGTCTATGAATAAGTACATATTAAAATATCACATGGAGGCGCATGAAACTGGGAAGAAAAGATACATGTGCGATCAATGTGATTACGCGACAATACTGCCAGCAAATTTAGTGCAACATAAGTATAAACATTCTACAGAAAAGCGTTTCAAATGTGAAGTATGCCCATTCGCTACTAAGTACAACACATCACTGCGGTTCCATGTGAGGAAAAAACACTGTGATCTCCCAACATTCAGTTAA
- Protein Sequence
- MDLDVTVKVENVEIENVKIENIKVEKVDMRKDPTSFLPEEPMSYEIKKKKKKKKKQQEDPFKDIDDKIGARVEQVTVIDPEVKIKVENIEVELDFNDFADSSGLMLVGPHCDDSQEPAVKIEQDNHEATLLTFESVIKNKASHESTERYPSSVPNLPLKPAPVHVCKVCHLVFQSPKTLRMHQKRKHKSFRKSFKHICDYCGMSYEMKNSLVAHIKRKHGPNAMPDDREERTCEICALVFKGMTRLRMHMRRKHGYFQDSFQHVCQDCGLTYDKYRSLIVHIQRKHSNENKKPEVNQWYNCPFCAKIFTKRETYARHVQRKHHVSDSIKQETLTDNYLDSCKNEETGEITCKECPLVFSSVNFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTRETYLNHSHMKVIKECNICGLIFASQGGLAKHLRCTHKMDTPKTVFCSLCNEGFHEKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPTVNHFNAQMQKCEQCNETFKDEFELCRHVNMVHGRPDDMANNEREMLDIKKEDADIKDCFQCTKCPDSYLTWEQLKLHYEANHHNIEETQCQICGEILPGNELQKHIKNLHTDTEMHCRYCEFKTNIRVSLTQHMLRHKNAETIHCDYAGCKYKTFYEGAMEKHKRKHADQGVKLQCTQCPFQSMNKYILKYHMEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- -
- 80% Identity
- -