Clig026244.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990970.1:12471080-12478787[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0018 0.17 13.1 5.7 1 23 266 288 266 288 0.98 2 12 1.9e-05 0.0018 19.3 2.5 2 23 296 317 295 317 0.95 3 12 0.16 15 7.0 1.4 1 23 321 343 321 343 0.96 4 12 3e-05 0.0029 18.7 0.9 1 23 348 371 348 371 0.98 5 12 0.00028 0.026 15.7 0.1 3 23 377 398 376 398 0.96 6 12 0.099 9.3 7.6 0.0 3 20 413 430 412 432 0.93 7 12 0.0005 0.047 14.9 0.7 3 23 446 467 446 467 0.98 8 12 0.3 29 6.1 0.9 2 23 487 509 487 509 0.95 9 12 0.0038 0.36 12.1 2.0 2 23 521 542 520 542 0.96 10 12 0.0018 0.17 13.1 5.9 1 23 548 570 548 570 0.98 11 12 1.3e-06 0.00012 23.0 0.8 1 23 576 598 576 598 0.99 12 12 0.00079 0.074 14.2 1.5 1 23 604 627 604 627 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTGAAAGTGTGCCGTGTTTGTTTAAATATAAACGTAAAAATGTATAATCTAATATCAGACCCATTGGAATCATATTTTTCATCAATCATGATTGAAAGTAAACCATTATACCCAACCTTACCACCCTACATTTGCTATGAGTGTGCAGCACTTGTGAAGAAGTTTTACTCATTTAGACAGAAGTGTCTACGGAGTCAAACTATACTCTGTGGAGTAATTGATGATTGTGGCAAATTAACTCCAGCATCAATCAAATCAGTCAACAGACAGAGTCTCCTCACAATTTCAAACATAACAAACATTGACATAGATCACGAAAATACATCAACCAATGTAAGACCAGAAGTAGCCATTCAAATTATTAAAAAAGAGGATCACGATAATCATGATGATGTAGACATGACTCCTGATCTTGGATCTAGTGATGATGAACTATGTATAGAGAAGAGAGATGGCGGAGATAAGAATTTGGATGTGGAGAAAGTGGAGATTAAGATGCATTTGAATGAAGAGTTAGAAGAGCCAGAGCTTGCAGAAACTACAATCGAAACACCAAAATTCCGGCCAAATAAAGCTCGAATATCCCAGTCCAGGAAACAAGTGAGGCCGAAGAGAACTGGTACTAATGTATCAAAGAAAAGGACTTCGAAAGCCGCCAAAGAAGCTGACTCATGCAGCGAGGACAAAGATAGTTTGAAGGACATTACTGTTGTTACTTTATCGATAAAAGAGCAATTGGAAGAGATAAACAAACGAAAACAATCATCTAACTACCTGAACTGTCCGTACCAGTGTCACGAGTGCTATAAAGGGTTCAACAACAAGCGCACGTGGGAACATCACGTCACCAAACATTCTCCGAATGCGGGCGACAAAGAATGTACAATATGCAAGTACAGATTCAAAACGAAACGCAATCTTCAGAGACATGCACTGAATCATGGAAAGAAATATATCTGCAAGTTATGTCCTTATAACTCCAGCAATGTTACTACAGTCAAGCACCATCAAGGTTCTCACAAAGGAGTAACATACAAGTGTGACTACTGCAGCGAAGTGTTCACTGTGCGGACGACGTACGTGATCCATATGCGGATCAAGCATCCGTCGGAGAACATTTGCGGGTACTGCGGGTACTCGTTCTACAGCAAACAGGGCCTCGTCGTGCATAAGAACATGGTGCACAAAGATATAGTAAAAGCTGAGGAGAATAAAGAAGGTCCATATTGCGCGGAATGCGATGTCCAGTTCATATCTACAGAAGCATATAAGCGACATCTGGTTATGTCAGTCAAGCACACCAGGACCAAAGACTCTATCAACGGCTGCCGTGTGTGCGGTGCGACGTTCACGGAGCCTGAGGAGTTACGGCTCCACCATCGCAAGGAGCATCCCAAGAAGCAGCCGAAGCACTACCGCCCGAAGACCACCAGCGACAAGTGGCCAGCTAAGTGCGAACATTGCTCAGAACAGATAGCGAACGCGCGCGCCTATTGGAAGCACTTTAGGCTGATGCATCCCAACGAGAACTACCCCGTGAAGAAGAAATGCGTGTGTGATATATGCGGCAAACGATTCGTGTGCAACGCATTACTAGTGATGCACAAACGCGTGCACTTCGGCGAGCGGCCGTACGAGTGCACGCGTTGTGACCGCAAGTGCTTCACGGCACACGACCTGCGCGTGCACCAGCAGAAGCACTCCGACCTGAGGCCATACACCTGCAGCCTCTGCCAACAGGCCTTCAAGAGGAAGGAGGCACTTGAGAGACATTTAAAGATACACTCCGGCGATAATCCATATAAATGTGAGATTTGCGGCGTTGCGTTCAACAAGTCGTGTACGAGAACTCTTCACGTCCGCACAGTCCATACGAAGGAGCCTCCACCTTCGCGGAAACATCGAAATAAGCTCCAAAAATAG
- Protein Sequence
- MEDVKVCRVCLNINVKMYNLISDPLESYFSSIMIESKPLYPTLPPYICYECAALVKKFYSFRQKCLRSQTILCGVIDDCGKLTPASIKSVNRQSLLTISNITNIDIDHENTSTNVRPEVAIQIIKKEDHDNHDDVDMTPDLGSSDDELCIEKRDGGDKNLDVEKVEIKMHLNEELEEPELAETTIETPKFRPNKARISQSRKQVRPKRTGTNVSKKRTSKAAKEADSCSEDKDSLKDITVVTLSIKEQLEEINKRKQSSNYLNCPYQCHECYKGFNNKRTWEHHVTKHSPNAGDKECTICKYRFKTKRNLQRHALNHGKKYICKLCPYNSSNVTTVKHHQGSHKGVTYKCDYCSEVFTVRTTYVIHMRIKHPSENICGYCGYSFYSKQGLVVHKNMVHKDIVKAEENKEGPYCAECDVQFISTEAYKRHLVMSVKHTRTKDSINGCRVCGATFTEPEELRLHHRKEHPKKQPKHYRPKTTSDKWPAKCEHCSEQIANARAYWKHFRLMHPNENYPVKKKCVCDICGKRFVCNALLVMHKRVHFGERPYECTRCDRKCFTAHDLRVHQQKHSDLRPYTCSLCQQAFKRKEALERHLKIHSGDNPYKCEICGVAFNKSCTRTLHVRTVHTKEPPPSRKHRNKLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -