Clig021264.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990983.1:2253271-2256670[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00061 0.057 14.6 1.7 2 23 56 77 55 77 0.96 2 16 0.00012 0.012 16.8 2.4 1 23 81 103 81 103 0.98 3 16 0.0014 0.13 13.5 0.6 1 23 108 131 108 131 0.96 4 16 2.2 2.1e+02 3.4 0.2 2 19 139 156 139 161 0.77 5 16 0.0016 0.15 13.3 3.3 1 23 168 191 168 191 0.96 6 16 5e-05 0.0047 18.0 3.5 1 23 197 219 197 219 0.96 7 16 0.00057 0.054 14.7 1.2 1 23 225 247 225 247 0.98 8 16 3.9 3.6e+02 2.6 0.4 1 8 252 259 252 260 0.89 9 16 0.064 6 8.2 1.1 1 23 293 319 293 319 0.88 10 16 0.079 7.4 7.9 0.4 2 23 391 412 390 412 0.96 11 16 0.065 6.1 8.2 1.1 1 23 416 438 416 438 0.97 12 16 0.0001 0.0096 17.0 0.7 1 23 443 466 443 466 0.95 13 16 1.1 1e+02 4.4 4.6 1 15 472 486 472 496 0.80 14 16 0.00043 0.041 15.0 1.0 2 23 503 525 502 525 0.96 15 16 2.2e-05 0.0021 19.1 4.4 1 23 531 553 531 553 0.99 16 16 3.7e-05 0.0035 18.4 1.8 1 23 560 582 560 582 0.97
Sequence Information
- Coding Sequence
- ATGATTATAAAACTAGACATCACTGATCTTGAATGCAGCCTTTGTGACCAGAAAATAGATGGTCTCCAAACAATTATGGAGCATTTGAAAGATATACACCAACGGCCAATCCATTTAGACATCGACAATCATATTTTACCGTTCAAATTTGATACCGATGTCCTACAATGCAGCATTTGCGCGAAACAATTCGATAATTTCAAGCATCTCTCAGAGCATATGAATGAGCATTATAAAAACTATAACTGCTCAGAATGTGGGCGATATTTCATCAACACGCGTTCTTTAAGGACTCATAAGAATCGGCATCAGACCGGAGTCTTCATTTGCGCGTATTGCTCCAAAATTTTCAATACTAGAATTAAAATGAAAGAACACGAGAGAGTGCTACACCTTAGAGGCTCCAAGACAAGGAAATGTGGGTATTGTGAGGAGATGTTCATGGATCCCGTGAGGAAAACTGAACATGAGGTCAAGGAACACGGCGCCCCCGTTCCTCAGTTCGAATGCAAAGCTTGCGGAAAGAACTACGATAGCCAACGGTCTTTGAAAGATCATACGAAGCACTACCACCTATTATTACGACCCCACACTTGTTCCGATTGCGGCAAAGGATTCTACAACAAACAAGAAATGAAACGACATAGAGTGAAGCATACCAAAATAAAGGAATTTCAATGCGTTATTTGTTCCAAATGGTATGGGACAAGAAGTTCCCTGAAGACACACATGTACACGCACGAAGAACAGTCGTACACGTGTAATGAATGCGACGAAGTGGACCCGAACCGCGAGAAAATGTACCAACTAATACAAGAAATCAAAGCCATCCTCACATTCACCAACGCCACGCCATATAAATCTAAAAACGTGCGTTACTACTGCGCGTATTGCTCCACCGACGGGCCCCACTTCGAGGATCCCGATGACCTTCGATCCCACACGAGGACTGAGCACGTGGGACACCGGATAGACCAAATAGAATACGCCATGCGCCCATATTGGATGAACGAAGTCATAAAACTCGACATCGATAACCTCCTTTGTACAGTGTGCTGTATCGTCATAAATAACTGGAACGAAATGTTCAGGCATTTAAAAGACAAGCACAATGTACACCTAGACCAGGCTTATTCTAGAGCAATTCCTTATATACTAAAACCTGATCTAAAATGCGCACTTTGCAAGGAGGCTTACAACAATTATTTGCATTTAGACGGCCATATGAACGCCCATTACAACAGCTATGTCTGCGATGATTGCGGTGACACATTCCTATCGCACACTCGGCTTAAGCAACATGCAAAGATACACGACACAGGTAAGTATCCTTGTAACATATGTAATAAGGTGTTCTCCCTGCAGAAGTATAGAAGAAAGCACATAGTTTCCGTCCACGAGCATCAGTCGAAGTATAAATGCTCCTATTGTCCCGAGAAATTTACAGGGGAGTATCTTAGGCACTTGCATTGTCTTGAGCACCATAAAGAGACGATTACGACTATCACCTGCGAGTTGTGCGGCAAATCGTTCACTTGGAAGCCGTACTACATGACACATATGAAGAAGAAACACGAGAACAATAAGAAATATAAATGCGACCAGTGCGACAAAACTTTCCACAAGCAGAATGAACTGAAAAGTCATTTGTTAAGACACTATACTTCGAAAAATTACTTCGAATGTAACATTTGTCATAAGATGTATGCGTCAAAGCCTTCGCTGAAACAGCACGAGAAGCTGCACAATAAGAAATGA
- Protein Sequence
- MIIKLDITDLECSLCDQKIDGLQTIMEHLKDIHQRPIHLDIDNHILPFKFDTDVLQCSICAKQFDNFKHLSEHMNEHYKNYNCSECGRYFINTRSLRTHKNRHQTGVFICAYCSKIFNTRIKMKEHERVLHLRGSKTRKCGYCEEMFMDPVRKTEHEVKEHGAPVPQFECKACGKNYDSQRSLKDHTKHYHLLLRPHTCSDCGKGFYNKQEMKRHRVKHTKIKEFQCVICSKWYGTRSSLKTHMYTHEEQSYTCNECDEVDPNREKMYQLIQEIKAILTFTNATPYKSKNVRYYCAYCSTDGPHFEDPDDLRSHTRTEHVGHRIDQIEYAMRPYWMNEVIKLDIDNLLCTVCCIVINNWNEMFRHLKDKHNVHLDQAYSRAIPYILKPDLKCALCKEAYNNYLHLDGHMNAHYNSYVCDDCGDTFLSHTRLKQHAKIHDTGKYPCNICNKVFSLQKYRRKHIVSVHEHQSKYKCSYCPEKFTGEYLRHLHCLEHHKETITTITCELCGKSFTWKPYYMTHMKKKHENNKKYKCDQCDKTFHKQNELKSHLLRHYTSKNYFECNICHKMYASKPSLKQHEKLHNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -