Clig015258.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990966.1:11080159-11082967[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.5e-08 6.1e-06 27.1 4.9 1 23 245 267 245 267 0.98 2 10 0.001 0.095 13.9 1.7 1 23 273 296 273 296 0.96 3 10 4.6e-05 0.0044 18.1 1.2 1 23 304 326 304 326 0.98 4 10 0.00083 0.078 14.2 0.8 1 23 334 356 334 356 0.97 5 10 0.0054 0.51 11.6 0.6 1 23 390 413 390 413 0.91 6 10 0.0017 0.16 13.1 1.5 2 23 419 438 418 438 0.96 7 10 3.8e-07 3.5e-05 24.7 1.8 1 23 444 466 444 466 0.98 8 10 2.6e-05 0.0025 18.9 2.4 1 23 472 494 472 494 0.96 9 10 0.00027 0.025 15.7 0.8 1 23 500 523 500 523 0.96 10 10 0.14 13 7.2 0.6 1 21 529 549 529 550 0.94
Sequence Information
- Coding Sequence
- ATGGCCAATGTAAAGAGTAGATTAAAAACACCCAAAAGTGGGTCTCCTAAAAAGAGGGGACGCCCTAAATCGAAAAAGTCGTCAACAGGTCCCAGAAAACAAAAAGGCGTCTTAAGGAGTGAATCACAAATTGTTAGAGAGTGTGATGTGGTAATGAAGAGGCCGAGTAACACTGTAGTCATGACACCAGAGGAAAAAGTACAATTTATACTGACTAATGGTCACAAACTGAAAGAAAAATTTATTGCTAGACAACCTAAAAACGGTGGGAAAAATCGTGAGCCACCAATATATTATAGGAAAAAGCAAAACAGAGAGCTCCCTCTAATAACAAAAAGTGGTCGGGTTATGAAGAAAACTAAATGCAATTTAAAACTCATTGATAGTATATTGAAAAATGAACTAATGATTTGTGACAGTGCTGAAGCTAACCCTCCCAAGTCTCATCGAGTTGCTCCTTCACCTTTGGCAATATCACCTTTACCAAATGGTGAAAATAATAACAATGATGATGATGAAAAATCAGACCAAAACAATACATGTGAGGATATTTCTGATGATGAGTCGGATATTGATATGATATCTGATGTGGATAATACTGATGAATCTGATAACAACTCTGAGCACTCTACTGGCAGTAAACAAAAGGAAATGAAAACAAAAAGCAAATCTAAGTCTAAAAAACCAACACATGTTACATTAGATAATGGAGTAGTGTTAAAACTAGCATATTTTGAATGTGACCACTGTGGAAAATCTTTTAATAGAAAAGCTTCACTGTGTAGACACATGATGATGCACCTAAATATAAAGCCGTACACTTGTATTTATTGCACCGAGGAGTTCAGAAGCCGCTACAACATGCAAGTTCATATTAAACGATATCATAAAAATGTCCATCCTGGCCTATATGTCTGCCATTACTGTGAAGAGACATTCCTTACAAAAGAAAACTTAAAGATACATTTACTTGTCCACACTTCTAAACCAGATAACTCTTACAAATGTATTTACTGCGATGAGGTATTTACACAAAACCTGTTGCTCATGAACCATGAGAAGAAACATATGGTTAACGGGCGTCATGCGTGCACACTATGCGACATGACCTATCGATGTCGCAACCGCCTCTACTTGCATGTCAAAAGTCATTTAAAAATAAAAGATTATATTTGCCAGTATTGTGGTAAAGGGTTTTTAAGGAATGAGTCTATGGTGCGACATTTTGACGTATTCCACGGTGGGCATAGACTAGTGTGTCCTATATGCAAGAAGACTTTGAAGGGACATTTGACTGAGCATATGCGTACGCATGAAAAGAAGCGGCCGCATAAGTGTCCTGATTGTGGACAGCGCTTTACGCAATCCACTCAACTAAACGTCCATCGCCGCGCGCACACTGGGGCAAGGCCATACCTTTGCCAAATATGCAACAGATTTTTCTCGCATTCCAATGCGCTAATGTTGCACATTAGACGTCACACAGGGGAGAAACCGTTCCCCTGTGCCATGTGCCCAATGTCTTTCTCTCAACTACCGCACATGAAGACACACATGTATAAAATACACGGTAAAAAGAACCCATACAAATGTTCCAGTTGCAATTCCTTTTTCAAGCTCAAAGCGCAGCTTGATGTACACGCGAAGTCATGCAAATCAGGAAAAGGTAAAGATAAAAAAAAGTCCAAAAACTCTGAGGAAGAGGTAGTGGAGTCGATGATGTCTCTGTCACGGATGAGATTCCTGTTGGCCCTTCTATTTACGATGATCACCACCAAAGAAAAACTCAAATACTTAGGCTTTAACAAACGCCTCATTGACGAGATTCTTATAGAGTCTTTGGAGGCTATGGAAAAAACTCCATGCAAGAATCAGACTTTTACGCCGATAAAGCGTCTAAAGACCAACATTGAGATGTTGTTAATCGGAACTGTACCCAAAGACCAGATGGAGAGGTTTAAGAATGAGAACAAGTCGACTGAGGATATTTTGGAACTTCTGACAAACGAAAAAGGAAAGTAA
- Protein Sequence
- MANVKSRLKTPKSGSPKKRGRPKSKKSSTGPRKQKGVLRSESQIVRECDVVMKRPSNTVVMTPEEKVQFILTNGHKLKEKFIARQPKNGGKNREPPIYYRKKQNRELPLITKSGRVMKKTKCNLKLIDSILKNELMICDSAEANPPKSHRVAPSPLAISPLPNGENNNNDDDEKSDQNNTCEDISDDESDIDMISDVDNTDESDNNSEHSTGSKQKEMKTKSKSKSKKPTHVTLDNGVVLKLAYFECDHCGKSFNRKASLCRHMMMHLNIKPYTCIYCTEEFRSRYNMQVHIKRYHKNVHPGLYVCHYCEETFLTKENLKIHLLVHTSKPDNSYKCIYCDEVFTQNLLLMNHEKKHMVNGRHACTLCDMTYRCRNRLYLHVKSHLKIKDYICQYCGKGFLRNESMVRHFDVFHGGHRLVCPICKKTLKGHLTEHMRTHEKKRPHKCPDCGQRFTQSTQLNVHRRAHTGARPYLCQICNRFFSHSNALMLHIRRHTGEKPFPCAMCPMSFSQLPHMKTHMYKIHGKKNPYKCSSCNSFFKLKAQLDVHAKSCKSGKGKDKKKSKNSEEEVVESMMSLSRMRFLLALLFTMITTKEKLKYLGFNKRLIDEILIESLEAMEKTPCKNQTFTPIKRLKTNIEMLLIGTVPKDQMERFKNENKSTEDILELLTNEKGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -