Clig021307.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990983.1:2540804-2544147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0034 0.32 12.2 0.1 1 23 110 133 110 133 0.93 2 19 0.67 63 5.0 1.1 2 23 161 183 160 183 0.93 3 19 0.015 1.4 10.2 3.8 2 23 207 228 206 228 0.97 4 19 0.00034 0.032 15.4 2.2 1 23 232 254 232 254 0.97 5 19 0.027 2.5 9.4 1.6 1 23 259 282 259 282 0.95 6 19 0.14 14 7.1 2.2 1 23 289 312 289 312 0.87 7 19 0.018 1.7 9.9 3.9 1 23 319 342 319 342 0.98 8 19 0.00054 0.05 14.8 2.8 1 23 348 370 348 370 0.95 9 19 4.9e-05 0.0046 18.0 0.5 1 23 376 398 376 398 0.99 10 19 0.97 91 4.5 5.0 1 19 468 486 468 491 0.93 11 19 0.89 84 4.6 0.2 2 23 519 541 518 541 0.95 12 19 2.6 2.4e+02 3.2 4.2 3 23 565 585 563 585 0.96 13 19 0.0015 0.15 13.3 0.4 1 23 589 611 589 611 0.95 14 19 0.005 0.47 11.7 1.1 1 23 616 639 616 639 0.92 15 19 0.062 5.8 8.3 2.1 2 23 647 669 646 669 0.87 16 19 0.00018 0.017 16.3 2.9 2 23 677 699 676 699 0.96 17 19 3.2e-05 0.0031 18.6 2.4 1 23 705 727 705 727 0.95 18 19 9.8e-05 0.0092 17.1 0.3 1 23 733 755 733 755 0.99 19 19 9.3e-05 0.0088 17.1 2.7 1 23 761 784 761 784 0.97
Sequence Information
- Coding Sequence
- ATGAAGGTGTTAACCCTTGCGCTGGGTTTTAGGGAGGTAACCCGATCAAAAGGTGCTCAGGAAACTATAGAAGATACTAAAACAGTTAAAAATGCACTCAAAAGGAAGACTGTTAAAGAAGAAATTAACAAAACCGATAAAGCTATAACTAATCATAAAACAAATAAAAAAAATGCACCAAAAAGAAAAAGGGTTAAAGGTGTACTTACTAAAATAGGCGAAGCAAGGAAAGAAACGCTTGAAGTAATGAAAAAACACCAATCAAATCTAAAAGAAATTCTAATGTGCACCAACTGTACACCTTTTCTAGGAAAAAGGTATATGGGATATGCTTGCTCGTATTGCGATTCGCAATACCCAAATCCAATAGATTTAAAAAAACATACTCTAGAGATCCACAAAGATCAATACGATCCTGTTACCTCAGCCGTTCATAAAAGAATAAACGAATTCTGTGTCAAATTAGATATCACAGATTTACGCTGCAAAATATGCGATTGTGATTTAGAATCACTAGAAAATACACTTAAACATTTAAAGGATGAACACAGCAAAACTATATTTACAGATATCAATCATCAACTCTTACCTTTTAAGTTTAATAATAGTGATAGTATTAAATGTTGTATCTGCCCAAGTGTCTTCGAGAAATTCAAAAGTTTACAAGAACATATGCACACACATTTCCGTAATTATATTTGCGAAGAATGTGACATGGGTTTTGTCACCCACGGATGTTTACGACGGCATACGGCTAAACACAAAATCGGAGATTTCAAATGCGCTATATGCTCTAAAAACTACGACACATATCGCAAAATGAAATCTCACGAAAAGTTAGTGCATAAACTCAAATATATGGCGTATAAATGTGGGTATTGCAGCGAAAAATTTAATACACATCAAAAGAGAGAAATGCACGTCGCTGAAACACATGGTGGAGAATTCACTAAGTTCAAATGTCGTGCTTGTGATAGAACGTTTTCTTGCAAACGAGCTTTGACTATCCACACTAGGAGGGATCATCTGATGGAACGACCCCACAAGTGCAGTCAATGTGACAAGAAATTCTATACAGCCACCCTGCTAAAACTGCATGAGGTCTCGCATACAGGAGCTAAGGAGTTCCAATGCGATGTCTGCTTGAAGAGTTACGGGAGACAGAAGACTCTGGTTGAGCATATGAAGATACACAACGATGACAGAAGATTCAAATGTAACAACAAAACTAAGAACAATAATGAACCAGAAAATAGTCTCACAACACAAAACGAAAGTATTAAAAAATCTCATCGTACTAGAGAAGAGGCTAGAGAAGAATTACTTAAGCATCAGAATAATATTCAAGAAATATTAACTTGGACCAATGCAACACCCATACGTCGAGAGAAAGATGTTGCGTACGCCTGTTGCTATTGCGAAAACCAATTTCATAATCCTGCAGAACTTAAAAGGCATTGCTTAGAACTACACGAAGATCAAAAGAACCCAATAATGGTCCAAAGAAAAAATAGAAGAAGTGAGTTCTGCATCAAATTGGACATCACAGGCTTGCAATGCAAGCTTTGCAACAGCAATATAGCTTCGTTGGAAAAGTTGCTAGAACACCTCCAGAAAGAACATAAGAGAACTATTTACACTGATATTAAAAATCAAATTCTACCGTTCAAGTTTGAAGGCGAAGATTTGTTCTGCTGCATTTGTCTCAACGTCTTCGAGAAATTTCGCAAACTGCAAGAACATATGCACATACACTACAGGAATTTTATCTGCGAGGAATGCGATCTTGGTTTTGTCACCAAAGGCTGTCTTATCAGCCACTCAGCGAAACACAAACTAGGCACCTTCAAATGTGATAACTGCCCAAAGGTTTTTGATACTTTACGAAAGAAGAAATCACACGAGAAAGCTGTACATAGATACGTTAATTTAATTAGCAAATGCGGGTATTGTGACAAAAGATTCATGAGCAATCATCAGAAGGATACACATCTAGTGAACGTACATGGGATTCAGTTGCAGACAATGAAATGCCGATCTTGTAATAAGACTTTTGACAACAAACGAGCTTTAACAACACATACAAGGAGAGACCATTTAATGGAAAGAAAACACGCATGTACGGAATGTGATAAGAAGTTCTTCTCGGCTAGTTTATTAAAAAAGCATCTAGTGAAGCACTCGGGGCTGAAAGAGTTCAAGTGTGACGTTTGCTTGAAGGCTTACGGTAGGAGAAATACGTTGGTGGAGCATATGAGAATCCATTTGGATGATAGGAGGTTCAAGTGTGAGCGTTGTGGCCAAGCGTTTGTCCAGAAGTGTAGTTGGAAAGCACATATGAAAAATAGACACGGCGATTATGTTTAA
- Protein Sequence
- MKVLTLALGFREVTRSKGAQETIEDTKTVKNALKRKTVKEEINKTDKAITNHKTNKKNAPKRKRVKGVLTKIGEARKETLEVMKKHQSNLKEILMCTNCTPFLGKRYMGYACSYCDSQYPNPIDLKKHTLEIHKDQYDPVTSAVHKRINEFCVKLDITDLRCKICDCDLESLENTLKHLKDEHSKTIFTDINHQLLPFKFNNSDSIKCCICPSVFEKFKSLQEHMHTHFRNYICEECDMGFVTHGCLRRHTAKHKIGDFKCAICSKNYDTYRKMKSHEKLVHKLKYMAYKCGYCSEKFNTHQKREMHVAETHGGEFTKFKCRACDRTFSCKRALTIHTRRDHLMERPHKCSQCDKKFYTATLLKLHEVSHTGAKEFQCDVCLKSYGRQKTLVEHMKIHNDDRRFKCNNKTKNNNEPENSLTTQNESIKKSHRTREEAREELLKHQNNIQEILTWTNATPIRREKDVAYACCYCENQFHNPAELKRHCLELHEDQKNPIMVQRKNRRSEFCIKLDITGLQCKLCNSNIASLEKLLEHLQKEHKRTIYTDIKNQILPFKFEGEDLFCCICLNVFEKFRKLQEHMHIHYRNFICEECDLGFVTKGCLISHSAKHKLGTFKCDNCPKVFDTLRKKKSHEKAVHRYVNLISKCGYCDKRFMSNHQKDTHLVNVHGIQLQTMKCRSCNKTFDNKRALTTHTRRDHLMERKHACTECDKKFFSASLLKKHLVKHSGLKEFKCDVCLKAYGRRNTLVEHMRIHLDDRRFKCERCGQAFVQKCSWKAHMKNRHGDYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -