Clig012193.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990969.1:5434813-5444402[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.033 3.1 9.1 1.4 6 20 12 26 6 28 0.86 2 14 0.0052 0.49 11.7 0.2 2 20 34 52 33 54 0.93 3 14 0.65 61 5.1 0.5 1 12 209 220 209 229 0.83 4 14 6.9 6.5e+02 1.8 0.1 1 16 365 380 365 382 0.85 5 14 2.2e-05 0.002 19.1 1.1 1 23 390 412 390 412 0.98 6 14 4.4e-05 0.0041 18.2 0.7 1 23 440 462 440 462 0.99 7 14 3.6 3.4e+02 2.7 0.3 1 8 487 494 487 508 0.75 8 14 6.5e-05 0.0061 17.6 0.3 3 23 516 536 514 536 0.96 9 14 0.0024 0.22 12.7 2.7 1 23 552 574 552 574 0.98 10 14 1.3e-06 0.00012 23.0 4.5 1 23 580 602 580 602 0.98 11 14 0.0033 0.31 12.3 6.3 1 23 608 630 608 630 0.97 12 14 8.3e-06 0.00078 20.5 0.4 1 23 636 658 636 658 0.98 13 14 0.00029 0.027 15.6 1.1 1 23 662 684 662 684 0.98 14 14 0.00058 0.055 14.6 0.1 1 23 692 715 692 715 0.96
Sequence Information
- Coding Sequence
- ATGGGAGGCCTGCCATTGAATTGTCCTCTTTGTTGCAATAAGACTTTTAATTCTAAGAAGTTACTTACTGAACATTTGTCGAATGTTTTCGCAAATGTGTATTGTCCAGTTTGTAACATTAAATGCACATCATTATCTCAGCTCATAGAACATTTATCTCAAGATAATTGCCAGTCAGATGGTGCTGTGCATACTATAATATTTGAGGAGACCTCTCATGGGAATAGTGGTGAAAACGCATCAGATATTGAGAGTTCTGATATTAAAATGGTAATCCAAAATGGTTTGAATACTGACAATGCAAGCATTTTTAGTACAGAACACAGTTATGAAGCCCAAGTGGATCCCAATGATGATAACAAAATGTATGTGGAACTATTTACTAAACAACTGCCTAAACCATGTCTTCAAACCCGAGAACTAAAGCTGGTGAAAGAAAATGGGGAAAGTCGCTATATGATTGTGTCACATGATGATACTGAACTAAATGCAGGCAGTCCTATTGTAACAAAACAAAATACTGATGGAACTATATCTCTTACGACAGTTAAAGACATGAAACTGGAAAATGATGTGTTGATAGCAGCAACAGGAAACTTGCCAGAAGATAGTCAGGAAGAGATCTACAGCTGTAACACCTGCAAAGTGTCATTCTCATCAGTTATAGAGCATATTCAGAATTACCACAATGATCAGGAGGTGGTAGTTGAGGAACCAATGGAAGAGACTGAGTATGATATATTGCCGGTTGGTAATGAAAATTTGGAGAGTGAAGACCTATTACTGCCTACTGATAAACAGCCGCCACGGCGCGTAATCACCGATACGGGGGATATTATAGAGGAATCACTTATTTTAAAATCAGAAAATATTACCATGCAGTCTGACTTGAATGAGTCCTTGGATTCCATCCAGCAAGATACAAAATATAATCTAGAAGAGAAACATGACGAGCGTGCATTCTCTAATATTGGCAGCAGCGTCATTAAAGAAGGCACTCAAATTGAAGATAAAGATAAACGAGATATAAAGCGTTCTCACAAAGTGGTCCCTAAAGAAGTGCCAACAGACAGCGGCTTCTCAATAAAAATGTACCAGTGCTTAACATGTAACATAACTGCCACCAATTTGAAGGAATTCCAAATGCAAACATGTAAAACAGTTAAATATTCGTGCCCGTTTTGCCCTGTGACGTATGAAAATTCAAAATCTTTGTGTGCACATATGAAAGTGCACAAAGTAAAAGTAGATCGTGTAGGGAAGGGAAATGTGCCTCGTATAGTTAATAAGGAACCCGCCGCTACTGTTGCCATCTCATACGAATGTGGGATATGCTTTACGGTATTCCCCAGTAACAAGTCATTGAAACTTCACAAACGGATGCATAATCCAATTAAATCACGGCCCATAGAGCCACCAATAGAAACGATTGACGGCTCAGAAGTAAGCGAAGGTAGATACCGTTGTAATATTTGCGAGAAATTAATCCCCGAGGACTATAGAACCATCCACCAGAACTCGCACAAATCCTCTGAGAAAATAAACTGTGCTATATGTAACAAGAAATTTACCTCCACGGAATATCTTGAAATGCATATGACTGTACATAATCTGGATAAGGCACCAATAGACAAACAGGATCAATCTCTCCCATATAACTGTTTATATTGCAAAAGGAGGTTTGCAAGACCACATGAAAAAGTAAAACATGAAAGGATACATACAGGTGAGAAACCCCATTCGTGTGAGATTTGTGGCAAGTCGTTCCGTGTGTCGTACTGCCTCACGCTACACATGCGCACGCACACCGGCGCCCGGCCGTACGCCTGCCCACATTGTAACAAGAAGTTCAAAGCGCATAGCGTATACAACCACCATCTGCTGACACACTCGGAGGTGCGCGCGTACAAGTGTCCGTTCTGTCCGAAAGCGTTCAAGACGTCTGTACAACTCGCCGGACACAAGAACTCGCATACAAAGCCGTTTTCCTGCACGCATTGCAATAGGCCGTTCGCGTCTCTGTACGCGGTGCGAGTGCACACCGAGACGCACTCGCGGCAGAACAACCTCAAGTTCTCTTGCGAACTGTGCGGCGCTAGCTACGCGCGAGCCTTCGCGCTGAAGGACCACGTGAAGCAGGCGCACAACCAGGAACAAGCGCAGTCACCCCCGCAGGCGATAACTGCGGATGACGATTGGACGATCAGCAAAGATAGCCCAGATCCGGATGGTCTCAACAAAGATTTGACGCATGATATGGACTTGGGAATGAGTGGCGGTGAATTATAG
- Protein Sequence
- MGGLPLNCPLCCNKTFNSKKLLTEHLSNVFANVYCPVCNIKCTSLSQLIEHLSQDNCQSDGAVHTIIFEETSHGNSGENASDIESSDIKMVIQNGLNTDNASIFSTEHSYEAQVDPNDDNKMYVELFTKQLPKPCLQTRELKLVKENGESRYMIVSHDDTELNAGSPIVTKQNTDGTISLTTVKDMKLENDVLIAATGNLPEDSQEEIYSCNTCKVSFSSVIEHIQNYHNDQEVVVEEPMEETEYDILPVGNENLESEDLLLPTDKQPPRRVITDTGDIIEESLILKSENITMQSDLNESLDSIQQDTKYNLEEKHDERAFSNIGSSVIKEGTQIEDKDKRDIKRSHKVVPKEVPTDSGFSIKMYQCLTCNITATNLKEFQMQTCKTVKYSCPFCPVTYENSKSLCAHMKVHKVKVDRVGKGNVPRIVNKEPAATVAISYECGICFTVFPSNKSLKLHKRMHNPIKSRPIEPPIETIDGSEVSEGRYRCNICEKLIPEDYRTIHQNSHKSSEKINCAICNKKFTSTEYLEMHMTVHNLDKAPIDKQDQSLPYNCLYCKRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCNKKFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCTHCNRPFASLYAVRVHTETHSRQNNLKFSCELCGASYARAFALKDHVKQAHNQEQAQSPPQAITADDDWTISKDSPDPDGLNKDLTHDMDLGMSGGEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -