Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990983.1:2325029-2328348[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.05 4.7 8.6 0.9 1 23 28 50 28 50 0.93

2 18 0.00045 0.042 15.0 0.2 2 23 78 100 77 100 0.95

3 18 3.2e-05 0.003 18.6 4.5 2 23 124 145 123 145 0.97

4 18 0.045 4.2 8.7 0.3 2 23 149 170 148 170 0.96

5 18 0.013 1.2 10.4 5.4 1 23 175 198 175 198 0.96

6 18 1.9 1.8e+02 3.6 2.8 2 23 210 232 209 232 0.90

7 18 0.2 18 6.7 0.2 1 23 238 261 238 261 0.95

8 18 1.2e-06 0.00012 23.0 1.0 2 21 266 285 265 286 0.96

9 18 5.3 5e+02 2.2 1.0 1 23 329 351 329 351 0.95

10 18 0.0016 0.15 13.3 0.2 2 23 379 401 378 401 0.95

11 18 3e-05 0.0028 18.7 2.4 1 23 424 446 424 446 0.98

12 18 0.094 8.9 7.7 0.5 2 23 451 472 451 472 0.95

13 18 1.5e-06 0.00014 22.8 0.7 1 23 477 500 477 500 0.97

14 18 1.2 1.2e+02 4.2 3.3 2 23 510 532 509 532 0.88

15 18 0.0073 0.69 11.2 0.6 1 23 538 561 538 561 0.96

16 18 0.0031 0.29 12.4 3.6 2 23 566 587 565 587 0.97

17 18 3.5e-06 0.00033 21.6 3.7 1 23 593 615 593 615 0.98

18 18 0.00019 0.018 16.2 0.3 1 23 624 647 624 647 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.05	4.7	8.6	0.9	1	23	28	50	28	50	0.93
2	18	0.00045	0.042	15.0	0.2	2	23	78	100	77	100	0.95
3	18	3.2e-05	0.003	18.6	4.5	2	23	124	145	123	145	0.97
4	18	0.045	4.2	8.7	0.3	2	23	149	170	148	170	0.96
5	18	0.013	1.2	10.4	5.4	1	23	175	198	175	198	0.96
6	18	1.9	1.8e+02	3.6	2.8	2	23	210	232	209	232	0.90
7	18	0.2	18	6.7	0.2	1	23	238	261	238	261	0.95
8	18	1.2e-06	0.00012	23.0	1.0	2	21	266	285	265	286	0.96
9	18	5.3	5e+02	2.2	1.0	1	23	329	351	329	351	0.95
10	18	0.0016	0.15	13.3	0.2	2	23	379	401	378	401	0.95
11	18	3e-05	0.0028	18.7	2.4	1	23	424	446	424	446	0.98
12	18	0.094	8.9	7.7	0.5	2	23	451	472	451	472	0.95
13	18	1.5e-06	0.00014	22.8	0.7	1	23	477	500	477	500	0.97
14	18	1.2	1.2e+02	4.2	3.3	2	23	510	532	509	532	0.88
15	18	0.0073	0.69	11.2	0.6	1	23	538	561	538	561	0.96
16	18	0.0031	0.29	12.4	3.6	2	23	566	587	565	587	0.97
17	18	3.5e-06	0.00033	21.6	3.7	1	23	593	615	593	615	0.98
18	18	0.00019	0.018	16.2	0.3	1	23	624	647	624	647	0.95

Sequence Information

Coding Sequence: ATGACTATCTCGGAACGCCAAAACGCAGCCACGTTCCTTGAATGCACCACAATCAAGCCGTTTTTTTACCAGCAAGCGAATTTCAAATGCTTCTATTGCAACGAAGTATTTCCCGAAATCCACTCGGTGTTACAACACACCGCTTTACATGTCACTCCAGAAAGGTTTTGCTTACTAAAACAATACCTAAGAAAAGGCAAAAGAGTCATAAAGGTGGATATATCTGATCTCAAATGTAGGCTTTGTGAGCAAAAATATTCAGATCTTGATGATTTGAGAAAGCATTTAATAGTAGCTCATAAGAAGGAGTTTAATTCTGCTGGCAATGGCCTAATGGCTTATAACTTAAGCACGAATAATGGCCAACTGACTTGCCATAAATGTTCAAAAACTTTCAACTCTTTCTTCCTTCTAAATAGACATATGAACGTGCATTTTAATGTAGTTTGTGAGACCTGTGGCCTTGGTTTCATGTCACACCAACGCCTAGTTAATCACAGAATAGTTCATCAAACGGGAGTTCATAAATGCGACAAATGTCAAGAAGTATTCCAGACAAAATTGAAATTGAGATACCACATGTTCAAAAAGCACGAAGTAACAAACGCCAAGAAGATAAAGCCATTAAAATGTCCACATTGCTTAGAAAGATTCGCTGAACATTATAGAAAGATGACCCATTTGAAAGAAGTCCACGGTATCACGTTTACTTTTGAATGCAGTGCTTGCAAAGCGGTACTTCCAACTCGAAGAGCTTTAACAGAGCATACTACGAAACTGCATACGCAAAAGATCCAATGCAAAGTCTGCGGAAAGTGCTTCGGGACAAAGTCTTTATTGAAAATGCATATGAGAGGGACTGGAACGAATCGTCGGCAAGGTGCGTTGACTAGTATATGGGAACTTACGCTCTCCGAACGTCAGAACGCGTCCATACTCCTCGGAAACACAACAGCTACACCATTTGTATACTGCAGATACTTCTTCAAATGCTTTTTCTGTAGGGAACAGTATCCGGAAATACAAACGGTCCTACAACACACACTAACGCACGAAACTCCAGAACACTCAACGATATTGAAACAGCACCTTCAAAAAGGCAAAAGGACTGTCAAGGTTGATATATCAGGACTGAAATGCAGAATTTGCGGAACAGGCTTCAAAGACCTTGATGAAGCTCGACAGCATTTGACTTCGGAACATAGCAAGGCGTTCACAGAATCTGGAAACGGTTTGGTAGCTTACAATCTGTCTTCCAAAAACGGCCAGTACTCCTGCCATATTTGCACCAAGATTTTTCAAACGTTCATCCTGTTAAATCGACATATGAACGTTCATTTTAGTAATGCGGTTTGTGAGACGTGTGGTGCTGGGTTTATGACGCATCAGCGACTCATACAGCATAAAGAGATTCATCTCCCGGGAGGCTATCCCTGCGATAGATGTAATAAAGTATACACAACGAATTCTAACCTCAAATACCATATAGAAAAAGCTCACGAAGGAACTACTAAGATGCGCATGCTACGTTGTCCCCATTGCTCGGAAAGATTCGCGGAACACTTCAGAAAACTGAAACATTTGAAAGAGGTGCACGGAATTACATTTACCTTCGATTGTGAAGTCTGCAAGTCTATATTCCCAAGTCGCAGAGCGTTAACAATGCACACAAATAAGTACCATTCCGAGAAAACCCAATGCGAAGTGTGTAAGAAGAGCTTTAGCTGCATAACCACGTTGAAGAAACATATGATATCTCATACTGGAGAACGTAATTTTATTTGTACGATATGCCAAAAAGCCTACAGACATCAGAAGAGTTTAAAACAGCACATAAAGACTCATACACAAGAGGAGCAATATATAAAGTTCAATTGCTCAGATTGTGGTAACGGTTTTCCTAATAGGAACGATTTCAATAGGCATGTGAAAGAGTGGCATCCTAGAAGTTACTTTGATTATTCTGTTCACTGA
Protein Sequence: MTISERQNAATFLECTTIKPFFYQQANFKCFYCNEVFPEIHSVLQHTALHVTPERFCLLKQYLRKGKRVIKVDISDLKCRLCEQKYSDLDDLRKHLIVAHKKEFNSAGNGLMAYNLSTNNGQLTCHKCSKTFNSFFLLNRHMNVHFNVVCETCGLGFMSHQRLVNHRIVHQTGVHKCDKCQEVFQTKLKLRYHMFKKHEVTNAKKIKPLKCPHCLERFAEHYRKMTHLKEVHGITFTFECSACKAVLPTRRALTEHTTKLHTQKIQCKVCGKCFGTKSLLKMHMRGTGTNRRQGALTSIWELTLSERQNASILLGNTTATPFVYCRYFFKCFFCREQYPEIQTVLQHTLTHETPEHSTILKQHLQKGKRTVKVDISGLKCRICGTGFKDLDEARQHLTSEHSKAFTESGNGLVAYNLSSKNGQYSCHICTKIFQTFILLNRHMNVHFSNAVCETCGAGFMTHQRLIQHKEIHLPGGYPCDRCNKVYTTNSNLKYHIEKAHEGTTKMRMLRCPHCSERFAEHFRKLKHLKEVHGITFTFDCEVCKSIFPSRRALTMHTNKYHSEKTQCEVCKKSFSCITTLKKHMISHTGERNFICTICQKAYRHQKSLKQHIKTHTQEEQYIKFNCSDCGNGFPNRNDFNRHVKEWHPRSYFDYSVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01117588;
90% Identity: -
80% Identity: -