Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990982.1:1539915-1542177[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.5 2.4e+02 3.2 1.1 5 21 216 232 214 233 0.92

2 12 0.00077 0.072 14.3 1.7 1 23 283 305 283 305 0.98

3 12 8.5e-05 0.008 17.3 3.0 1 23 314 336 314 336 0.99

4 12 4.5e-05 0.0042 18.1 3.1 1 23 344 367 344 367 0.97

5 12 9e-05 0.0084 17.2 0.1 3 23 375 395 373 395 0.96

6 12 8.4e-05 0.0079 17.3 4.9 1 23 401 423 401 423 0.98

7 12 2.9e-07 2.7e-05 25.0 1.2 1 23 429 451 429 451 0.96

8 12 2.3e-05 0.0022 19.1 0.8 1 23 457 479 457 479 0.98

9 12 9.5e-07 8.9e-05 23.4 0.2 1 23 485 507 485 507 0.98

10 12 8.3e-05 0.0078 17.3 0.3 1 23 513 535 513 535 0.96

11 12 8.3e-05 0.0078 17.3 3.5 1 21 541 561 541 563 0.96

12 12 6.1e-07 5.7e-05 24.0 1.2 1 23 569 591 569 591 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.5	2.4e+02	3.2	1.1	5	21	216	232	214	233	0.92
2	12	0.00077	0.072	14.3	1.7	1	23	283	305	283	305	0.98
3	12	8.5e-05	0.008	17.3	3.0	1	23	314	336	314	336	0.99
4	12	4.5e-05	0.0042	18.1	3.1	1	23	344	367	344	367	0.97
5	12	9e-05	0.0084	17.2	0.1	3	23	375	395	373	395	0.96
6	12	8.4e-05	0.0079	17.3	4.9	1	23	401	423	401	423	0.98
7	12	2.9e-07	2.7e-05	25.0	1.2	1	23	429	451	429	451	0.96
8	12	2.3e-05	0.0022	19.1	0.8	1	23	457	479	457	479	0.98
9	12	9.5e-07	8.9e-05	23.4	0.2	1	23	485	507	485	507	0.98
10	12	8.3e-05	0.0078	17.3	0.3	1	23	513	535	513	535	0.96
11	12	8.3e-05	0.0078	17.3	3.5	1	21	541	561	541	563	0.96
12	12	6.1e-07	5.7e-05	24.0	1.2	1	23	569	591	569	591	0.98

Sequence Information

Coding Sequence: ATGGATATAAGTGTTCAGAAATTCGACACAATATGCCGAATCTGTTTATTAGAAAGTCGGGACATGAAATCACTTTACTCGAAAATGGACGGTGATCAACGTAACTTGTACGAAATCCTTGCATTTACTGTTGATATTAATGTACAATTTGAGGATATTCTGCCTAAACAGGTTTGTGGTGAATGTGAGTCTGTTTTGTATAAGGCTTATGCATTTAAACGACGGTATTTGAACTCTGAGACGATATTAAATAACGCCTACCAAAAATCTTTGTCTAAGAGAAAACCTTCCACTAGTCCAGGGCAAAAATGCTCGAGTAAAGATGAAAATGAGGATACAACAGATAAATTAAGCAGCTTTAGAGGTAACTTTGCGTCCACTAACGTTATTATATTGGGAACGCAACCCAATAGTGAGAAAAATGTGGTTGATAATACCACAATGTATCCATCAGATGACACTAGTTTTTGTCAGCATACAGATTCTAATGTACCTTTAATAAATGTAGAGGTGATCAAAGAAGAGGTAAGTGTTGGTTTTGGGGACGAACATGACTTTCCAGATGATATTAATGACATACAGCCAACTATAGTTGAATATAAGAAAGAAAATTCAGTAAAGCTTGAAGAAACAACACAGACTTGCTACTGCGGGCTCGCATTTACTTGCAAAGATACTTACCAAAGCCATTTAAAAAAAGAACAATGTAATAATTGTAAAGAAGTCAAAGTAAACAAAATAGTTGCCAGAAAAAAATGTGCATCTAACAATGGTAACAAAAACTTAAAAACAAACAATGATAGTAAATTACAGCAGAAAAATGTAACAAATGACAAACCTTTAACTTATATTTGCAAAATATGTATATGCGAGTTCAAAACGAAGGCAACCTTAGCCTCTCATATACGAAGACACGAAACTAGCAACATGAGGGAAATATATCAGTGTTCTCTATGTTTACGTAATTTTAAAAGTAAAACCTCATTATCAACCCACATAAAGAGACATGAGGTTACAGACAACATCAAACACACCTGTAAAGTCTGCAAAAGAGAATTTAAATATAAAGCTTATTTAGAAAACCATATCTCGACGATGCATTCTAAAAAGATCGGGATGAACTGCGAAGTGTGTGGTGAGACCTTTCCTAATGAAGAGAGTCTGGAAACGCATAAAGATACTCATACTAATGAGAAAAAACACAGGTGCACCATCTGCAACAAAGCTTTCATCATGTCTTGTACTTTGAAGGAGCATCTGAGGACTCATACGGGGGAGAAGCCATTCCTGTGCTCTCAGTGTGGACGAGGGTTTAGTCAGAAGACTAACCTGGCTCAGCACATGAGGCGACATCAGGGCCTCAAGCCTTTCAAGTGTGAAAATTGTGAGAAGAGATTCGTATCAAAAGGTGAACTAGACGCCCACAACCGTAAGCACAGCGGAGCCCACCCATTTGTGTGTGACGATTGTGGCAATGGCTTCACTACATCCAGTGCTCTAGTTAAACACCGTCGCATACACACCGGAGAGAAGCCCTACCTATGCGACATCTGCCCCATGAAATTTGCAGCCTCCGGTACATTGAAAAACCACAGACGGACCCATACCGGTGAGAGACCGTTTCAGTGTTCCCACTGTGAGAAGGCTTTTGTTCAACGTAATGATCTGATCTCTCACATACGGTGTCATACCGGTGAGAAGCCTTTTGTGTGCCCGTACTGTGGCCAGTCGTTCAGGAAAGCGTCCAGTCAGAAGACTCATATGAAGATGCATATTAAAGAGCCTGTGAGTTTGCTGCAAGGAGTCGGGGCCATGATGAACAGTATGCAGTGTTCTGAACAGTGA
Protein Sequence: MDISVQKFDTICRICLLESRDMKSLYSKMDGDQRNLYEILAFTVDINVQFEDILPKQVCGECESVLYKAYAFKRRYLNSETILNNAYQKSLSKRKPSTSPGQKCSSKDENEDTTDKLSSFRGNFASTNVIILGTQPNSEKNVVDNTTMYPSDDTSFCQHTDSNVPLINVEVIKEEVSVGFGDEHDFPDDINDIQPTIVEYKKENSVKLEETTQTCYCGLAFTCKDTYQSHLKKEQCNNCKEVKVNKIVARKKCASNNGNKNLKTNNDSKLQQKNVTNDKPLTYICKICICEFKTKATLASHIRRHETSNMREIYQCSLCLRNFKSKTSLSTHIKRHEVTDNIKHTCKVCKREFKYKAYLENHISTMHSKKIGMNCEVCGETFPNEESLETHKDTHTNEKKHRCTICNKAFIMSCTLKEHLRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCENCEKRFVSKGELDAHNRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYLCDICPMKFAASGTLKNHRRTHTGERPFQCSHCEKAFVQRNDLISHIRCHTGEKPFVCPYCGQSFRKASSQKTHMKMHIKEPVSLLQGVGAMMNSMQCSEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -