Clig023962.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990985.1:2137156-2139492[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.3e-06 0.00031 21.7 3.8 1 23 8 31 8 31 0.95 2 19 4.4e-05 0.0041 18.2 0.4 2 23 37 59 36 59 0.95 3 19 4.8e-05 0.0045 18.1 0.2 2 23 68 90 68 90 0.97 4 19 3.2e-06 0.0003 21.7 2.3 2 23 99 121 98 121 0.95 5 19 5.5e-06 0.00051 21.0 1.0 2 23 129 151 129 151 0.96 6 19 1.3e-06 0.00012 23.0 2.4 2 23 160 182 159 182 0.96 7 19 4.5e-07 4.2e-05 24.4 1.0 1 23 188 211 188 211 0.98 8 19 0.0072 0.68 11.2 0.4 1 23 255 278 255 278 0.97 9 19 6.8e-05 0.0064 17.6 1.6 1 23 303 326 303 326 0.98 10 19 0.43 40 5.6 0.6 2 20 334 352 333 354 0.93 11 19 0.016 1.5 10.1 2.2 2 23 363 385 363 385 0.95 12 19 0.0026 0.24 12.6 5.5 1 23 407 430 407 430 0.97 13 19 2.7e-05 0.0025 18.9 0.6 2 23 437 459 436 459 0.96 14 19 3.3e-05 0.0031 18.6 2.1 2 23 466 488 465 488 0.94 15 19 0.0066 0.62 11.3 2.2 1 23 494 517 494 517 0.97 16 19 0.17 16 6.9 7.1 2 23 525 547 525 547 0.95 17 19 0.00016 0.015 16.4 1.5 1 23 554 577 554 577 0.96 18 19 0.021 2 9.7 1.7 1 23 584 607 584 607 0.90 19 19 0.034 3.2 9.1 2.8 5 23 624 643 621 643 0.90
Sequence Information
- Coding Sequence
- ATGTATCAAAACACGTTGGATTTCGTTTGTGATTATTGCTCAAGAACTTTTACACGGAAATATAATTTGCAAACTCATATTGCTAACTGTCATATTAATTCTTCATGTCAATGCAATATCTGCGATCAAAGTTTTGGCAGCCCGGCAGGGTTGCAACAACATTTATCCAGAGGGCATAACAATTATGGACAACCGTTTCCCGAGTGTGAATTGTGCGGTCGTATTTTTACTAGAAAACAGAATATCGTATCTCATATGATCACGGTCCATCTACAAGGTCTCGGATACGAAGTTAAATGTAAATTTTGCGATAAAACATTTACCACGGAGCGAAATTTGAAGAGACATGTCAATCAGTTGCATAACCCCGATGTTGAATACCCAACTTGCAATGATTGCAACAAGGTGTTTAAAGGAAAACACTCTTTAATTGCTCATATACAATCAGTACACAATGTCAATGAGAAAGAAGCTATTAAATGCCATTTGTGTGATAAAGTCTATACAAACAACAGGAACTTGAAGAGGCACATTGAAATGTTTCACGGCGAAAGAGGAGAATACCGGTGTGATATATGTCCCAAAGTATACACGTCCAATCAAAGCCTACGACGCCACGCAAGAACTAGACACAGCACCGACAATCAGGAGCATTTGACCTGCAGTTCTTGCATGAAAGTTATAATAGGTAGAGAAAATTTCGACAGCCACGTACAATTCCATCACCAACAAGACGTGGAAATTGAGAATAAACCGCCAGAGTTTAGCTGCGATTCGTGCGAAAAAACATTCGAAGAGGAACCTTTTCTACGGCAACATGTAAAATCAGAGCATTCGTTCAAAGCTTTCTATAAGTATTGTAAGAACTCTTTGATCAAACAGTATGGTATTGATACGCAAAATGTTTACACTTGTGAGTACTGCGGGCACTCCTTTCTAACGGTTTACGAGCTCAAAGATCATATGAGAATTAATCACGATATTGAATATTCTCTTTCGACTTGCAATGTCTGCTTCAATAAGTTTTACAGCAAAGAAACTATGACTGTTCATAAAACTGTTTGTTTGCCACCACCGAATGTGAACTCTTGTAGTCATTGTGATAAGTTGTTCACGGATATATCAAGCTTAGAATTCCATACTCGGATTTTTCATCCGCAAGCACAAATTGCCGATTCGAACATAACATCGACTAATATTGACGATGAATCGGTGTCCTTCAAATGTGAGCATTGTGACAGGATTTATTACAGTGACCGGTCTCTCAAACACCATATTAAGCTTAAACACACTACTGATGAAGAAGTGGAATGTCAAATGTGTGGAAAAATATGCAGCAATAAATACTACCTAGCATCGCATATAAAAATCGTTCATAACACCGATTCCTGGTCCAGATGCGAGTACTGCGATAAGCAGTTCAAATCTAAAAGAAATATTAGACGCCATATTGAGTATACTCATTTAGGCATGCAGCGATATAAGTGTATTGAGTGTGAGACGTTGTTTAAAGAAAAAAGGAGCTTACGGAAGCATGTTAGGACGAAGCACCCCAATTCTACCTATTTTCCCCAATGTCATATATGTCATAAAAGATTTGAATCGGCGAAATCGTGCAAAATACATCTGAAATTGCTACATTCTTTTAATATGAATACACACCCATGTCATCTCTGTTCTGTATCGTTCAGCTCCAATGAAGCGTTGACTATTCACTTAGAAACAAAACACTTGGCTGAAGACGAAATATACAAATGCGAAGAATGTAATTTAGTATTCAGAGGCCAAGAGAAATTCGACAGCCATAATGAAGTTTGTCACGTAAATTTAGTCCCAAGCATAAAGCAAAAAGTATTACCTCGTTGTATACTGTGTATGAAAGATTTTAGTACTAGAAAAACTTTAAAACGACACATTAAGAAATTTCACGAGGATTTTGATGTCGACGAGTTAGCCACTTTTGGCTCTCGGCGGAGAACATTCACAGTTGAATGTGATGATTGCATCAAAAATTTCAACGACGATTTTCACTTTAACGTCTACAATAAGTTAAAACACTTGCGGGATTCTGTGATTTTCAAATGCGAATCGTGCTTTGTGTCCTACAATTCATTGGAATACGCGATCCAGAGATTTAAAGTTATTAACGCAGATGCTTGTAGGAGTAAAATGATACTGAGCGAACTTTGTACGGCAGAAATGAGCGAAGAAGAGACAGATTTTTCTGGCTTCGGTGCGTTGCATGATATGTTACCAGAGAGTACTACGGGCGATATTAAATTGGAACCACAGGATGTTTCAGATATTCATATAAAGATAGAACCAGAATCTCCGTAA
- Protein Sequence
- MYQNTLDFVCDYCSRTFTRKYNLQTHIANCHINSSCQCNICDQSFGSPAGLQQHLSRGHNNYGQPFPECELCGRIFTRKQNIVSHMITVHLQGLGYEVKCKFCDKTFTTERNLKRHVNQLHNPDVEYPTCNDCNKVFKGKHSLIAHIQSVHNVNEKEAIKCHLCDKVYTNNRNLKRHIEMFHGERGEYRCDICPKVYTSNQSLRRHARTRHSTDNQEHLTCSSCMKVIIGRENFDSHVQFHHQQDVEIENKPPEFSCDSCEKTFEEEPFLRQHVKSEHSFKAFYKYCKNSLIKQYGIDTQNVYTCEYCGHSFLTVYELKDHMRINHDIEYSLSTCNVCFNKFYSKETMTVHKTVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIDDESVSFKCEHCDRIYYSDRSLKHHIKLKHTTDEEVECQMCGKICSNKYYLASHIKIVHNTDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSTYFPQCHICHKRFESAKSCKIHLKLLHSFNMNTHPCHLCSVSFSSNEALTIHLETKHLAEDEIYKCEECNLVFRGQEKFDSHNEVCHVNLVPSIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEDFDVDELATFGSRRRTFTVECDDCIKNFNDDFHFNVYNKLKHLRDSVIFKCESCFVSYNSLEYAIQRFKVINADACRSKMILSELCTAEMSEEETDFSGFGALHDMLPESTTGDIKLEPQDVSDIHIKIEPESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00447464;
- 90% Identity
- iTF_00018365;
- 80% Identity
- -