Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990972.1:13451325-13456386[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.027 2.5 9.4 1.2 2 23 248 269 247 269 0.96

2 18 0.51 48 5.4 0.0 2 23 310 332 309 332 0.93

3 18 7.9e-07 7.4e-05 23.7 0.9 2 23 355 376 355 376 0.97

4 18 6.5e-06 0.00061 20.8 0.6 1 23 382 405 382 405 0.98

5 18 0.015 1.4 10.2 0.0 1 23 411 433 411 433 0.94

6 18 2.8e-05 0.0026 18.8 3.1 1 23 439 461 439 461 0.98

7 18 0.032 3 9.2 2.8 1 23 581 603 581 603 0.95

8 18 0.00023 0.021 15.9 2.0 2 23 610 632 609 632 0.92

9 18 1.8e-07 1.7e-05 25.7 0.7 1 23 638 660 638 660 0.99

10 18 1.3e-06 0.00012 23.0 4.4 1 23 666 688 666 688 0.98

11 18 0.00092 0.086 14.0 1.3 1 23 694 716 694 716 0.97

12 18 0.00028 0.027 15.6 3.8 1 23 722 744 722 744 0.93

13 18 3 2.9e+02 2.9 1.4 2 23 797 817 797 817 0.94

14 18 2.9e-06 0.00028 21.9 0.4 1 23 823 846 823 846 0.96

15 18 1.8e-06 0.00017 22.5 3.2 1 23 852 874 852 874 0.98

16 18 0.12 11 7.4 0.0 1 23 880 902 880 902 0.97

17 18 9.2e-05 0.0087 17.2 0.0 2 23 908 929 907 929 0.95

18 18 0.02 1.9 9.8 1.0 6 23 939 956 937 956 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.027	2.5	9.4	1.2	2	23	248	269	247	269	0.96
2	18	0.51	48	5.4	0.0	2	23	310	332	309	332	0.93
3	18	7.9e-07	7.4e-05	23.7	0.9	2	23	355	376	355	376	0.97
4	18	6.5e-06	0.00061	20.8	0.6	1	23	382	405	382	405	0.98
5	18	0.015	1.4	10.2	0.0	1	23	411	433	411	433	0.94
6	18	2.8e-05	0.0026	18.8	3.1	1	23	439	461	439	461	0.98
7	18	0.032	3	9.2	2.8	1	23	581	603	581	603	0.95
8	18	0.00023	0.021	15.9	2.0	2	23	610	632	609	632	0.92
9	18	1.8e-07	1.7e-05	25.7	0.7	1	23	638	660	638	660	0.99
10	18	1.3e-06	0.00012	23.0	4.4	1	23	666	688	666	688	0.98
11	18	0.00092	0.086	14.0	1.3	1	23	694	716	694	716	0.97
12	18	0.00028	0.027	15.6	3.8	1	23	722	744	722	744	0.93
13	18	3	2.9e+02	2.9	1.4	2	23	797	817	797	817	0.94
14	18	2.9e-06	0.00028	21.9	0.4	1	23	823	846	823	846	0.96
15	18	1.8e-06	0.00017	22.5	3.2	1	23	852	874	852	874	0.98
16	18	0.12	11	7.4	0.0	1	23	880	902	880	902	0.97
17	18	9.2e-05	0.0087	17.2	0.0	2	23	908	929	907	929	0.95
18	18	0.02	1.9	9.8	1.0	6	23	939	956	937	956	0.96

Sequence Information

Coding Sequence: ATGAATAATGAAACTGAACAAATATTTGTACTAAATTCTGCTGAGAGTCAGCCTTCCAGCTCCACACAGAAGCCGGATGAGGTCGTAATGCCGAGTAGTTCACTGGTCAACCTTGAGAATGTTGAAGACTTCTCCCGTGTGTGCCGGACCTGTGCCACCATCACCGAGTTTGTGATTCCTATATTTGCTGGAGAGGGGCTGCAGAGCAGCCTAGCTGATAAAATACACAAGCATTTACCAATACAGGTATGCGAGGGCGACGTGCTGCCGCGCGTGGTGTGCTACCAGTGCGCGAGCACGCTGCTGGCGTGGCACGAGCTCGTGCAGTGCTGCGTGCAGGCCGACGCCGCCCTGCGCGCGCGCGTGCTTCACGTCCAACAGGAACAGGAAACTACCGAAATACAATCGGAATCAAGATTAAAAGATGAAAACCAAAGCAAGTGGTTTTACACAAAAGTGAAAAATGCTCTCATCGATTACTTTAATAATGATCTTAATGAGGATGACTTAGATGTGGAATTTGTTTGCCAAAAGTGCGCTGAAAAGCCTGCACTGACCTCAGTGCGAGGCCTCGCAGAACATATCCACCACAATCACTCGCCTGACATAAGCGATTATAAATCCGTCACGACGTTTATCACGAACCACATCACGTTCGAACAAGTGTTAGTTTCTGAGGATTCTGACAGAGAAGCTCAATCAGACGTTAAACAAAGGGCGCAGGTAGTTCTGGCGAGCTTGAACTGCCCGTTCTGTGCCGGTGTGTTCTCGTCCTCCACGCGGCTCATGCACCACCTGAACAAGCACGTAGAAGTGTGCATCGCAGACGGCGTCATGTGCTGTGACGTCGTTTACAACAATAAGAAAATCTTCGTGCAACATCTGCAGGACGCTCACGTTGATAAGACTGAAGATTCTGTTCAAGTTGTGTGTGTCAGCTGCGGGTACACGGCCGACGACGTTAACGATTTAAAAAATCACTATAAAGAGGCGCATAACGACCTGAAAAGTGATAAAGAAAAGAAAGTAGAGAATCCGTACAACCAGAAATACATCCCTGCCGTGTGCCCCGAGTGCAACAGGACCTATTCCAACAAATACAACATGTTTGCGCACATGAAGACTCACAGCAACACCACACTTTACCCGTGCGACCAGTGCTCTAGGACCTACCGCAACCCGGGGAACCTGAGCAACCACAAGCGAACAGTTCACAAGGGTATAATGAATTTCTTGTGCGTCGAGTGCGGCGAAGTATTCCCTACGAGTACAGAACGCGACGTACACGCGCGAGTACACACCGGAGAGAGACCGTTCAAGTGCGAGCACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCTCGCAACATCTTAAAATACACTTGGACATACGAGACCACGAGAGCCCCTGTGACTCTCTCGAACCGGAGCCCCTCGGACACACAGACAGATACTCCGACCACTCCGACGACAAACCGCTGGCGGCGCTGGCGACCAAGCCCACGCACCTATATCACAACTTCTACAGAGCACTTGTTAATTTCAGAAACCATATTGTCAATGATCAACACAAGGAAGATTACCCTGACCTCACTGACTCCAGTGTGTCGGAGGGTGACGACAATGATGTAGACAGGTTCGACGACCTGTCGCAGTGTAACATGAGGCGAGACAGGCTAGACGAAGAGACGAGACTAGAACTCAGTCAAGTGCAGAACAAAATAAACGACAAAGTTTACTACACTTGCAAGATTTGTGGGAAGAACCTGAGCTCTGCACACACGTACTTGTTCCACAAACGAATACACACGGGCGAGAGGCCCTGTGTGTGTCATATATGTGGCAAGCAGTTCCGAGCGCCGAACGGTCTCCAGCGACACTTGACGGAAACGCACGAGCGCGTCCGAAGATACACCTGCAGTATATGCCCGAAGAACTTCGCCAACTCGCAGAATCTTAAGCAACACCTAAGGATACACACAGGGGAAAAGCCGTTCGTCTGTTCTCATTGTGGAAAACGGTTTACTCAAAGCGGTTCTCTACACGTACACCTCAAGACTCACAGTGAACAGTTCCCGTACCACTGCGCGGAGTGCGGAGCCAAGTTTAGACTGCGATCGGGCTTAGTGAGGCACAAGCTAAAGCACACGGGGGAGAGGCCGCACGTGTGCGCGCACTGCGGGAAGGGCTTCCGGCAGCGCCACGAGCTCACCAGCCACAGCCTCGCGCACTCCGACCTCAAGCCCTACGCCTGCAGCGCAACGTTGTCATTAGATGAGGCCAAAGAAGATATCGAAGGTCAAAAAGATACCAAAAGTGTTACAAAGCTCGAGGTGAATATCGATAAGCCGGAGCTGACCGTCGGCGAGGACGGGAAACGGTACGCGAAGTGTCGAGCGTGTCACAAGAGCGTGTCCGCGCGGTCGTGGACGAGGCACGCGCGCGCGCACCGCGGCGAGAGGCGCTACAGCTGCCACACGTGCGGCCTCGCCTTCAACGACAGCGGGAACCTGGCGCGCCACACCAGGGCCGTGCACACGAAGGAGCGCCCGTTCTCGTGCCCCACGTGCCAGAAGCGCTTCTCTAGGAAGGATCACCTGGAGGACCACGTGAAGTCGCACTCGGAGGAGCGCTCGTTCGTGTGCAGCGCGTGCGGCGCGGCGTGCAAGTCGGGCGCGGCGCTGCGCATGCACGCGCGCGCGCACGCGGCCGCGCGCTTGCCGTGTCCGCAGTGCGGCGCGCAGTTCAAGCGCCGCGCCGAGCTGCGCGCGCACGCGAGCGTGCACAGCGGCGAGCGCGCGCACGCCTGCCGCTGCGGCCGCGCCTTCCGCCTGCGCACGCAGCTCAACGCGCACGCACGGCAGCACCAGCCCCGCCACGGACCCGCCGCGGACTCTTAA
Protein Sequence: MNNETEQIFVLNSAESQPSSSTQKPDEVVMPSSSLVNLENVEDFSRVCRTCATITEFVIPIFAGEGLQSSLADKIHKHLPIQVCEGDVLPRVVCYQCASTLLAWHELVQCCVQADAALRARVLHVQQEQETTEIQSESRLKDENQSKWFYTKVKNALIDYFNNDLNEDDLDVEFVCQKCAEKPALTSVRGLAEHIHHNHSPDISDYKSVTTFITNHITFEQVLVSEDSDREAQSDVKQRAQVVLASLNCPFCAGVFSSSTRLMHHLNKHVEVCIADGVMCCDVVYNNKKIFVQHLQDAHVDKTEDSVQVVCVSCGYTADDVNDLKNHYKEAHNDLKSDKEKKVENPYNQKYIPAVCPECNRTYSNKYNMFAHMKTHSNTTLYPCDQCSRTYRNPGNLSNHKRTVHKGIMNFLCVECGEVFPTSTERDVHARVHTGERPFKCEHCGKSYRAKNTLSQHLKIHLDIRDHESPCDSLEPEPLGHTDRYSDHSDDKPLAALATKPTHLYHNFYRALVNFRNHIVNDQHKEDYPDLTDSSVSEGDDNDVDRFDDLSQCNMRRDRLDEETRLELSQVQNKINDKVYYTCKICGKNLSSAHTYLFHKRIHTGERPCVCHICGKQFRAPNGLQRHLTETHERVRRYTCSICPKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEQFPYHCAECGAKFRLRSGLVRHKLKHTGERPHVCAHCGKGFRQRHELTSHSLAHSDLKPYACSATLSLDEAKEDIEGQKDTKSVTKLEVNIDKPELTVGEDGKRYAKCRACHKSVSARSWTRHARAHRGERRYSCHTCGLAFNDSGNLARHTRAVHTKERPFSCPTCQKRFSRKDHLEDHVKSHSEERSFVCSACGAACKSGAALRMHARAHAAARLPCPQCGAQFKRRAELRAHASVHSGERAHACRCGRAFRLRTQLNAHARQHQPRHGPAADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -