Basic Information

Insect: Craniophora ligustri
Gene Symbol: -
Assembly: GCA_905163465.1
Location: LR990964.1:5059803-5077191[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.6e-05 0.0071 17.4 2.2 1 23 431 453 431 453 0.97

2 20 0.0039 0.37 12.0 0.6 1 20 459 478 459 481 0.94

3 20 2e-05 0.0019 19.3 5.6 1 23 500 522 500 522 0.98

4 20 9.2e-05 0.0086 17.2 4.1 1 23 528 550 528 550 0.99

5 20 3.5e-05 0.0033 18.5 5.3 1 23 556 578 556 578 0.97

6 20 5.5e-05 0.0052 17.9 7.1 1 23 584 606 584 606 0.96

7 20 9.4e-07 8.8e-05 23.4 2.1 1 23 612 634 612 634 0.97

8 20 9.6e-05 0.009 17.1 6.7 1 23 640 662 640 662 0.97

9 20 9.5e-05 0.0089 17.1 6.5 1 23 668 690 668 690 0.97

10 20 4.6e-07 4.3e-05 24.4 1.9 1 23 696 718 696 718 0.98

11 20 4.7e-05 0.0044 18.1 7.9 1 23 724 746 724 746 0.98

12 20 2.4e-05 0.0022 19.0 6.6 1 23 752 774 752 774 0.98

13 20 1.9e-06 0.00018 22.5 4.2 1 23 780 802 780 802 0.98

14 20 2e-05 0.0019 19.3 5.0 1 23 808 830 808 830 0.96

15 20 0.00011 0.011 16.9 7.1 1 23 836 858 836 858 0.97

16 20 2.9e-06 0.00027 21.9 6.0 1 23 864 886 864 886 0.98

17 20 5.6e-05 0.0053 17.8 7.9 1 23 892 914 892 914 0.97

18 20 2.5e-05 0.0023 19.0 7.9 1 23 920 942 920 942 0.98

19 20 0.00069 0.065 14.4 0.3 1 23 949 971 949 971 0.96

20 20 0.035 3.3 9.0 4.1 1 23 980 1002 980 1002 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.6e-05	0.0071	17.4	2.2	1	23	431	453	431	453	0.97
2	20	0.0039	0.37	12.0	0.6	1	20	459	478	459	481	0.94
3	20	2e-05	0.0019	19.3	5.6	1	23	500	522	500	522	0.98
4	20	9.2e-05	0.0086	17.2	4.1	1	23	528	550	528	550	0.99
5	20	3.5e-05	0.0033	18.5	5.3	1	23	556	578	556	578	0.97
6	20	5.5e-05	0.0052	17.9	7.1	1	23	584	606	584	606	0.96
7	20	9.4e-07	8.8e-05	23.4	2.1	1	23	612	634	612	634	0.97
8	20	9.6e-05	0.009	17.1	6.7	1	23	640	662	640	662	0.97
9	20	9.5e-05	0.0089	17.1	6.5	1	23	668	690	668	690	0.97
10	20	4.6e-07	4.3e-05	24.4	1.9	1	23	696	718	696	718	0.98
11	20	4.7e-05	0.0044	18.1	7.9	1	23	724	746	724	746	0.98
12	20	2.4e-05	0.0022	19.0	6.6	1	23	752	774	752	774	0.98
13	20	1.9e-06	0.00018	22.5	4.2	1	23	780	802	780	802	0.98
14	20	2e-05	0.0019	19.3	5.0	1	23	808	830	808	830	0.96
15	20	0.00011	0.011	16.9	7.1	1	23	836	858	836	858	0.97
16	20	2.9e-06	0.00027	21.9	6.0	1	23	864	886	864	886	0.98
17	20	5.6e-05	0.0053	17.8	7.9	1	23	892	914	892	914	0.97
18	20	2.5e-05	0.0023	19.0	7.9	1	23	920	942	920	942	0.98
19	20	0.00069	0.065	14.4	0.3	1	23	949	971	949	971	0.96
20	20	0.035	3.3	9.0	4.1	1	23	980	1002	980	1002	0.99

Sequence Information

Coding Sequence: ATGAATCCGGACCACCATAGTATGAATACGGGTGGTGGCCAACCTCCTGGAAGTTCTGAGTCGCAGGCCCAAAGAGTTCAGGCCACACAACAACAGCAACAGCAGAATAACTTGCCTGCCACGACATCTGCTACTGATCTGCGTGTGAATTCAGCGGCAGTAAACGTTGCTTTGTCTAGTGTTGCTAAATATTGGGTATTTACAAATTTATTCCCTGGCCCAATACCACAAGTATCTGTGTACGGATTGCCCGCCGGCGCAAGGATTGAAAACGGAAAACCTGTGCAGGATCTTGGTCAAGCTCATGCTAGTATACTGAATGGAGATCCAAATATAATACTAGGGCATCATGCGGGGCAGTCCCAAGTCACAGTGTCTGCAGCTGGTGGCCAGCAGATACCGGTTTCACAAATCATTGCCACGCAGTCAGGTCAAACCCATGAAGCACTTGTGGCTCATAGTCAGCAAGCTGAGTTGGCTGCTCAAGGCTCCGGCAACAACTCACAGGTGTCAGTTAGTGCTGGCCAGGCCACTCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGACACCACTCACAACAACAACACATAATGCAACAACAACTCATGGCCACGGCGCGACCAGAGCACAGTAATCAACAGATACAACTGACGGTGAGTGAAGACGGAATAGTGACGGTGGTCGAGCCCGCGGGTACTAAGATGGTAGACAAGGAGGAGTTACATGAGGCCATCAAGATGCCAAATGACCACACCCTCACCGTGCATCAGTTACAACAGATTGTAGGACAACAGGTGATAGACAGTGTAGTCCGCATAGAACAAGCAACTGGGGAGCCGGCCAATATCCTAGTGACCCACAATCCTGATGGTACGACTTCAATAGAAGCCAGCGCTGCTGACCCTTTGGCAATCAAAGACGAGAAGGCGGCCAATAAGATGGAGACTGCTCAGTTCGCCCTACCCGCTGAGATAAAAGACATCAAGGGTATAGATTTAAAGAGTGTAGGTGCTATGGGAATGGAAGGTGCAGTAGTGAAAATCTCAGCGGGAGCCACTGAACATGATCTTCATGCGATGTATAAAGTCAATGTAGAAGATCTCTCGCAGTTACTTGCCTATCATGAAGTGTTTGGAAAACTTAACTCAGAAGGACAACAACAGCAAGCAAAGGCTATAAATGACGTGGAAGCTGAAGTAGAAGCGGGAACTAGCGCCGCCATGTCAGAAGCCGAATCATCGCCCGGGCACCACTCATGTGATATTTGCGGAAAAATATTCCAATTCCGATACCAACTTATTGTTCATAGGCGATATCACGGTGAAAGTAAACCATTCACGTGTCAAGTTTGCGGTTCTGCATTCGCCAATCCTGTGGAACTATCAAGACACGGAAAATGCCATCTTGCTGGTGATCCGAACGAAAGACATGCTAAAAGGGTTTCGCAAGATAAACCATACGCCTGCACAACTTGCCACAAAACATTCTCCCGTAAAGAGCATTTGGACAATCATGTGCGAAGTCATACTGGAGAGACTCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACTCGCAAAGAGCACATGGTAAACCACGTGCGGAAACATACGGGCGAGACGCCGCATCGATGCGACATTTGCAAGAAAAGTTTCACTAGGAAAGAGCACTTTATGAATCACGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGACATCTCACACAAACGATTCTCCATTCCGATGCGAACTGTGCGGCAAGGCGTTCACGAGAAAGGAACATTTCACCAATCACATACTGTGGCATACTGGCGAGACTCCCCACCGCTGTGACTTCTGTTCGAAGACGTTTACGCGTAAAGAGCATCTTCTGAACCATGTTCGGCAGCACACTGGCGAGTCGCCTCACCGCTGCAACTTCTGCAGCAAGTCGTTCACGCGGCGGGAACACCTCGTCAACCATGTGCGTCAACACACCGGAGAGACTCCATTCCAATGCGGATACTGTCCCAAAGCCTTCACAAGGAAGGACCACCTTGTGAACCATGTTCGGCAGCATACCGGCGAATCTCCACACAAGTGCTCATTCTGCACAAAATCGTTCACACGTAAGGAGCACCTGACGAACCACGTGCGTCAACACACGGGCGAGTCGCCGCACCGGTGTACGTACTGCGCCAAATCCTTCACCAGGAAGGAACATCTCACCAACCACGTGAGACAACACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCCCGGGCCTTCGCGCGCAAGGAGCATCTCAACAACCACATCAGACAACACACCGGCATCACCCCACACGCCTGCTCCTACTGTAGCAAGAGTTTCACCAGGAAGGAACATCTCGTTAACCATGTTCGGCAACACACGGGCGAGACGCCGTTTAAGTGTTCGTTCTGTTCAAAGTCGTTCTCTCGTAAAGAGCACCTCACGAACCATGTGCACCTTCACACTGGGGAGACGCCGCACAAATGTCCTTTCTGCACCAAAACTTTCTCCAGAAAAGAACATTTGACCAACCATGTTAGAATTCACACGGGCGAGTCTCCACATCGGTGTGATTTCTGCCAGAAGACATTCACTCGTAAGGAACACCTGACCAACCACTTGAAGCAGCACACTGGCGACAGTGCACATGTTTGCAAAGTCTGCACCAAACACTTCACCAGGAAGGAACATTTAGTTACGCACATGAGGTCGCACAGTTGTGGTGAGCGTCCGTTTAGTTGCGGCGAGTGCGGTAAATCGTTCCCGTTGAAAGGCAACCTACTGTTCCATGAACGATCCCACAACAAGAACAATGCTAACAGGCCGTACAGGTGTGAAGTCTGCTCTAAAGACTTTATGTGTAAAGCACATTTGGTGTCCCATCGACGCGTGCACGCGGATGGCGCTGAAACTGCAGCCACCGGCGAAACCCCCGCAGAGACTGAAGACTGTACAGACTGCAACAAGTGCATCAAAGTCGAGCCAGACAGAACTGAGAGAAAACATGAAATTAGGACTTCAGTGGACACCAGACCAGCAGAGAACAATGTTGCACAACCTCAACCAAACACGACTACTGTCATGATAACTAATAATCAGCAAGTCCGGCCACCGGGCGTGTCGGGTGCGAGCGCGGGCGTGGCGGCGGGCGGCCCGTTCCCGCACGCGGTGGGCGGCGCGCACCACGCCGGCGCGGCGCTGGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNPDHHSMNTGGGQPPGSSESQAQRVQATQQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAAGGQQIPVSQIIATQSGQTHEALVAHSQQAELAAQGSGNNSQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQQHIMQQQLMATARPEHSNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLAIKDEKAANKMETAQFALPAEIKDIKGIDLKSVGAMGMEGAVVKISAGATEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKAINDVEAEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRVSQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMTSHTNDSPFRCELCGKAFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGITPHACSYCSKSFTRKEHLVNHVRQHTGETPFKCSFCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDSAHVCKVCTKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNNANRPYRCEVCSKDFMCKAHLVSHRRVHADGAETAATGETPAETEDCTDCNKCIKVEPDRTERKHEIRTSVDTRPAENNVAQPQPNTTTVMITNNQQVRPPGVSGASAGVAAGGPFPHAVGGAHHAGAALAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: iTF_01030446;
80% Identity: -