Clig021318.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990983.1:2598552-2599727[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.043 49 4.7 0.1 14 27 30 43 17 54 0.86 2 7 0.16 1.8e+02 3.0 0.0 13 43 82 109 77 110 0.78 3 7 2.1 2.4e+03 -0.6 0.1 18 28 216 226 213 238 0.87 4 7 1.9e-05 0.021 15.5 0.2 14 43 242 268 233 269 0.91 5 7 0.022 25 5.7 2.6 5 26 262 283 262 285 0.90 6 7 0.0024 2.7 8.8 1.4 14 38 299 320 288 322 0.81 7 7 6.9e-05 0.078 13.7 3.7 13 44 326 354 319 354 0.89
Sequence Information
- Coding Sequence
- ATGGAGGTCGCCCGAAAGCTATTGATAAAACGGCGCAATGTTGAATACGTATTGCAGTACAGCAATGTTACACCTTTCATGTGGCATAAAGGGAAATACAAATGCTTTTACTGCAACGAAACAACAAAAGACCCAGGCATACTACGAGAACACACGGCGAATGTCCACCAATTTGCGAATCTAGAACTCGTGGTTTTCGATAGAACGAAAAATAATAGAAACAAAGACGCCGCTGTCAAAATTGACGTTACTGGAATATCGTGCAAGCTCTGTCCTCAGGCTGTGACGAATTTAGAGGAGCTTATACATCATTTGATCATAGCACATGACGCTGAATATGACGTCGGGGTCCCAAATTGTCTTCTCCCCTTCAAATTAGATAAAGATCAGCCAACGTGTCCCACTTGCAATATGAAATTTGTTTTCTTCGAATACTTGCTCCGTCACGCCAATAAACACCATCTTTCTCACCATTATATTTGCGATGTCTGCGGTACCAGCTTTCAAGGGGAGAATCATTTGAAAATGCATTATAGGTACTACCATCGAGAAGGAGGATATACTTGCGAATACTGTGGTATCAGCCTTGCAACTCTATCCAAAAAGATTCTTCACGAGAAAAATGTTCATTTAGTTAACCTCTCCACATGTCCTCACTGCCCGGAAACATTCAAAAGTCCCTACTTAAAGAAGCTACATTTGGCAAATGTCCATGGAGTCGAGGAACTGAAGATAAAGTGCCCATATTGTCCAAAAATCTACCCTCAAGAATCAATAATGTCCCGTCACATGAGGAGGGTGCATTTAAGAGAGAAAAACGTTGAATGCGAAGTATGTGGTGACAAATTCTTCGGACCATATGACGTCAAACTTCATATGGTCAAACATAACGGTGATAAGAAATTCGTCTGCTCAGTGTGTGGAAAGAAATTCTCAAAGAGGAGCAACTTAAACTCCCATTCAGTTCTTCATACCAGGGAAAAGGATTATATTTGCGTGATTTGCAATAAAGCTTTCGCTCATCAGACCAATTTGAGGATGCATCTCCGTAACAGACATCCCCAGCTAGATCAGACTCCGCTGCAAGTGAATGATATTGATGAAAGCGAAATGGTGCAAATGGAGATTATACAGGAGGAATTAGAAGGGGAAGTTCCTGGACAATATATTCCATGA
- Protein Sequence
- MEVARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPGILREHTANVHQFANLELVVFDRTKNNRNKDAAVKIDVTGISCKLCPQAVTNLEELIHHLIIAHDAEYDVGVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHGVEELKIKCPYCPKIYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGDKKFVCSVCGKKFSKRSNLNSHSVLHTREKDYICVICNKAFAHQTNLRMHLRNRHPQLDQTPLQVNDIDESEMVQMEIIQEELEGEVPGQYIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01285796;
- 90% Identity
- iTF_00925098;
- 80% Identity
- iTF_00383963;