Clig000706.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990977.1:9160131-9162203[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-09 1.9e-06 28.2 0.1 4 38 16 50 15 57 0.86
Sequence Information
- Coding Sequence
- ATGGAACCTCCTGTTAAGAAACGTCGTGCTCTTTGGTCAGTCAATCAATTGGCAGCTGCAATGGCAGCCGTGCAAAATGGACTACTATCAGAGCGTGCAGCAGCTATGCAGCACGGGATACCGAGAAGAACCCTGAAAAACCATTTAAATTCAGGTAAAGTCGAAAAAAAAATAGGTAGGAACACAATTTTAACAGAGGAGCAAGAAAATGATTTGGCTTCCAGGATTAAAAGGCTTGCCTCGGTAGGTGTTCCATTGACTCCAAAAGCCATACGTTTGCAAGCGTATGTTTTTTGTGAAAATAATAATATTAGACATTGTTTTAACGAAAGAACACATCAAACCGGAAAAGATTGGTTAAAATTATTTTTGAAGAGGCATCCAGATATTTCCAAAAGAAAAGCTCAGATCTTGAACCCAGCAAGAGCTCAAAAACTTAACAAACCCATAGTCACTCAGCACTTCCAGGAAATAAAGAAAATATATAACGAACTGGATATTATAACTCATCCAGAAAGATTATATAATATGGATGAGAAGGGCTGTAGACTCACCATACACGAACAGCCAATGGTGTTAGCTGAAAAGGGAGCAAAAAGGGTACATATGGTAGCACCAGAACATGCAGAGAACGTGACAGTGGCCGCATGTGTGAATGCCTTAGGAAACCCTACTCCACCAATGATTTTATTTAAAGGGAAAAAACTAAAACCCGAGTTTACTGACAACTTACCTGCGGGATCGCTAGTAAAAATGGCTCCAAAAGGTAGTATGACCACTTCTTTGTTTATAGATTTTATACACCATTTAGGAAAGTATAAAACTGCCGAAAAATGTCTGCTTGATTTTGATGGTGCTTCGTGTCATTTAGACTATCAGATAGTTGAAGCAGCAGACGAGGAAAATATTGTGTTGTACTGTTTGCCTTCGAATACAACACACGAACTTCAACCTTTAGACAAAAGTGTGAACAAATCCTTCGAACATCACTGGGATCAAGAAACTCTATTATTTTTATACCAAAATCCCGATAAGAAACTTACTAAAGCACGATTCAACTCAATTTTCAGTAGAGTATGGTCAAAGTGCATGACTCATGACAATATCGTCAATGGGTTTAGAGCAACAGGGCTTTATCCATATAACCCGGATGCCATTCCAGAGGAAGCCTACGCGCCATCTGTATTGACCGAAATATCCGAAATTTCGTTAAGGGCACAGTCTTATACTTTGGATAATAATCGAGCTCAGGAAACATCTCCAATTTCCGGCCCAAGTGGCATAAATTCACGGCCTCCTTTAAGAAAAAATTCTGAAAGTAGTTCTGATTCTGACAGAACAATATTTGAAGATTTGATTATTTCATGTCCAGCTTCACCATCTTTAATGAACCGAACAAATGTAGAAGATTCGATACCTTCATATTCAGTATCACCATCTTTATTGACAGAAGTAGTAAGTACAACGACGAATCATCGTTTGGTCGATTACAGTTCATCAGATTCAGACAGTATTATACAAGACCCACCTATTCAATTACAAGAAACCAATACCATAACAAGGCGACCAATTATTTATAGCTCAGATACTGATACTTCTGTTGAAGACCTTATGTCTCGTCTAGCCAATTATCCCAATAGGCAAGATAACCAAAACTTATACAGCCCCACTCCCTCAGAAGATCAAAATGCAGTGCCTCCATTGATGCAAGAATGTACGCCAGAAAAAGGAATCAGCCACGGTAGTTACATACATAATGTGGCAAGGCAAAGATCTGACAGTTCGTCATCAGAGGACTCAGAGGATAATATACCTTTACTGAATCTTATGCAGAATAAAAGTTTTAAATCTCCTTTCCAACAGCTAATACCAACTCCAAATTATGCTGTGGTGAAGCAAAATAAACCAAGACGGAAAGCTATTAACTACAAAGGCCAGCGGGTTACTACAGACTTATTTGTCTCTAGTAACCCGCCGTTCACCAGTGAACGTGTTAATTATGCCGGCTCTTATTTACCGCTGGTACCTTATAAGCTGATTTGGTCGTGTTTTACATTCTTACACTTATGCTAA
- Protein Sequence
- MEPPVKKRRALWSVNQLAAAMAAVQNGLLSERAAAMQHGIPRRTLKNHLNSGKVEKKIGRNTILTEEQENDLASRIKRLASVGVPLTPKAIRLQAYVFCENNNIRHCFNERTHQTGKDWLKLFLKRHPDISKRKAQILNPARAQKLNKPIVTQHFQEIKKIYNELDIITHPERLYNMDEKGCRLTIHEQPMVLAEKGAKRVHMVAPEHAENVTVAACVNALGNPTPPMILFKGKKLKPEFTDNLPAGSLVKMAPKGSMTTSLFIDFIHHLGKYKTAEKCLLDFDGASCHLDYQIVEAADEENIVLYCLPSNTTHELQPLDKSVNKSFEHHWDQETLLFLYQNPDKKLTKARFNSIFSRVWSKCMTHDNIVNGFRATGLYPYNPDAIPEEAYAPSVLTEISEISLRAQSYTLDNNRAQETSPISGPSGINSRPPLRKNSESSSDSDRTIFEDLIISCPASPSLMNRTNVEDSIPSYSVSPSLLTEVVSTTTNHRLVDYSSSDSDSIIQDPPIQLQETNTITRRPIIYSSDTDTSVEDLMSRLANYPNRQDNQNLYSPTPSEDQNAVPPLMQECTPEKGISHGSYIHNVARQRSDSSSSEDSEDNIPLLNLMQNKSFKSPFQQLIPTPNYAVVKQNKPRRKAINYKGQRVTTDLFVSSNPPFTSERVNYAGSYLPLVPYKLIWSCFTFLHLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00758084;
- 90% Identity
- iTF_00831122;
- 80% Identity
- iTF_00383580;