Clig017579.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990979.1:3722520-3722924[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-10 2.4e-07 31.0 0.0 4 38 13 47 11 51 0.93 2 2 0.99 4.6e+02 1.3 0.0 28 36 112 121 111 122 0.85
Sequence Information
- Coding Sequence
- ATGGAGCCGCAGAAGCGTAAGCAGTACGCTTCTGCTCAACTAGAAGCTGCACTTCTAGCTATAAATGAAGGGACCAGCGTGTACGAAGCTTCAAAATCCTTTGGCATACCGAGGACAACTCTGCGTGACAAAAGAAATAGTAAATATGTAAATGAACATTGTGGAAAACAAACTGTTTTAACGAAGGAGGAAGAAAAAAGACTGGTAGACTGGATTTTCTATCTCGGGAAGTCAGGTTTTCCTGTAACTAAGGATCCAAGACACTCAGGTCATGCTTCAACATCAGCAGGAGTTCTTCCAAATATATCATCATCTGATATTCATGAGTTACATGTACCAAAAACTGTTTTGTATAAGCGACATATTATTTTTCCATCTGACTCTGCTTCTGATAATATTTTTTAA
- Protein Sequence
- MEPQKRKQYASAQLEAALLAINEGTSVYEASKSFGIPRTTLRDKRNSKYVNEHCGKQTVLTKEEEKRLVDWIFYLGKSGFPVTKDPRHSGHASTSAGVLPNISSSDIHELHVPKTVLYKRHIIFPSDSASDNIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383558;
- 90% Identity
- iTF_00383558;
- 80% Identity
- -