Clig018422.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990976.1:3346798-3348614[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-11 5.3e-09 36.3 0.0 2 38 11 47 10 51 0.92
Sequence Information
- Coding Sequence
- ATGCCTCCCATTACAAGGAAGACCTGGGACCACGCTTCCATGATACAGGCTGTGAATGCAGTACGAAGAAAAGAAATGGGTTACTTAAAAGCTGCAAAACAATTTGGTGTTCCTAAGGGTACCCTTGAGCGCTATGTGAAGAAGGATTTCCGTGCAGAAGATCTTGTCCAGGTTCGTATGGGGAGACGACCAGCCTTACCTATTGATTTAGAAGCCGAGCTGGAAAGTTATTGCAAAGAAATGGATAGACGATTTTACGGCTTACGCCTGCAGGACATCAAATACATGGCTTTTCAACTGGCTATTAAAAACAATCTCAGGCATACTTTCAGTGTGACTAAAGCCTCTGCTGGTAAAAAATGGCTATGTGGATTTTTGAAACGACATCCTACACTATCTATCAGGACACCTGAAACAGTTTCTGCCGCTAGAGTAAAAGGATTTAATCCAGTTGCAGTCACTAACTTTTTCGATTTATATGAACCTGAACGTGAAAAGCTAAAATCCGCTCCACACAGGGTATACAACGTGGATGAGACAGGAATAACAGTAGTTCAACATAAACGTTCAAAAGTTGTCAGTATGAAAGGCAAAGAACAGGTTGGTGCGTTGACATCCCTGGAAAGAAGAAAACTCATGACGATAGTGACCTGTATGAACGCCTGTGGTACCTACGTGCCTCCATTAATAATTTTTTCAAGGAAAAATATGGCTCAAGAGCTAATGGATGGTGCACCAGCAGATGCCCACTACACACATACACGAAACATCGATGTGATTAATATAGCTCGAGACAACAACGTGATAATTGTTTGCTTGCCGCCACATTGCACTCATAGAATGCAGTCAATGGATGTGGCGTTTATGAAGCCACTAAAAGCTTATTACTCCCAAGAAATTGAAACTTGGCTGAGCAATAATTCAGGTCGCACACTAACAAACAAATACGTGGCTAGATTGTTTGGTGCGGCTTATGAAAAAGCTGCTACCATGACCAACTCCGTAAATGGGTTTCGCAAAGCAGGGTTAATTCCCTGCAATCGACATATTTTTACAGACGAAGAGTTTTCAATCTTTGATGAAGATTATCAAGAGCAAGAGTCACTAAATGTTCAGATCAATGACGAGAACGCAAATCCGGAAGATACAAGTTGTGTGCCTACTCCGATTGAAAACCAATTAGAGCCAACTGAAGTGTTATCCAATAGCCGAATTGCGAATGCAAAACCTTCTGATGAGCCTCAAGGATCGCCGAAAGCAACATCAAGTGCTAGTGTCTATGACAATTCAGTACCCAGTACATCATCTTGTGTCTCACCGTTTGCACTAAAGCCAGTGCCCAGGCTACCTAAGAACAATTCTTCTTCTAAGAAAACTCGAACTGGAGCAAGCAACCTAAATAAAAAGCAAGAAAAAGAAAATAAGAAAGGACAGAAGAAACGTTCAAATAAAAAACAGCAGAAAATAAAAATAAAAAAAGCTATTAAAAAGAAAAAAGCTGAAGAAGTTAGTTTCAGTTCCGAAGACGATGACATGCCTGAGCTCGCAGATAGTAGTGGGGATGAATATGATGCTGAATGTCCCTACTGTAGCGGAAAATTTTCACAGGATACAAGGGGAGAAAAATGGCCCAAATGTCAAAGTTGTTTTAAATTAAAAAAAACTACTGGCAACACTGGTAGCCGGTTGTCTAAAAGTTAG
- Protein Sequence
- MPPITRKTWDHASMIQAVNAVRRKEMGYLKAAKQFGVPKGTLERYVKKDFRAEDLVQVRMGRRPALPIDLEAELESYCKEMDRRFYGLRLQDIKYMAFQLAIKNNLRHTFSVTKASAGKKWLCGFLKRHPTLSIRTPETVSAARVKGFNPVAVTNFFDLYEPEREKLKSAPHRVYNVDETGITVVQHKRSKVVSMKGKEQVGALTSLERRKLMTIVTCMNACGTYVPPLIIFSRKNMAQELMDGAPADAHYTHTRNIDVINIARDNNVIIVCLPPHCTHRMQSMDVAFMKPLKAYYSQEIETWLSNNSGRTLTNKYVARLFGAAYEKAATMTNSVNGFRKAGLIPCNRHIFTDEEFSIFDEDYQEQESLNVQINDENANPEDTSCVPTPIENQLEPTEVLSNSRIANAKPSDEPQGSPKATSSASVYDNSVPSTSSCVSPFALKPVPRLPKNNSSSKKTRTGASNLNKKQEKENKKGQKKRSNKKQQKIKIKKAIKKKKAEEVSFSSEDDDMPELADSSGDEYDAECPYCSGKFSQDTRGEKWPKCQSCFKLKKTTGNTGSRLSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091644;
- 90% Identity
- iTF_00383552;
- 80% Identity
- iTF_00383552;