Clig002737.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990965.1:3090395-3095924[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 5.7e-09 36.2 0.0 1 44 54 97 54 98 0.90 2 4 6.4e-10 2.9e-07 30.8 0.1 1 37 158 194 158 202 0.90 3 4 9.6e-10 4.5e-07 30.2 0.1 1 45 253 297 253 297 0.95 4 4 2e-07 9.4e-05 22.7 0.0 1 38 353 390 353 395 0.91
Sequence Information
- Coding Sequence
- ATGGGCGGCAAATACCCACGCTACGCCACTGTCAAAGGCCAACACAGCGACAGTATTTATAGGCAGCAAGAACATTTTATATCATCTTCAGGGCCTACTTTTGCAGATGCGAAAACAATAGGGATTCCGTGGGAATATGTGAGGAAGCACGGTACGTGGTCAGAAGAAAACTTACGTGACGCAATGGATGCAGTAAAGCAAAAGGGATTGTCTCTACGCCAGGCTGCAAATCGCTATGGTGTACCCAGACAAACGCTAGCCGACCATTTGAAAACTGGAAATATCACAAAACGCCTGGGAAGACTGTCGATAATGGACGAGGCACAAGAGAAAGCCTTCGTGAACAAGATTACACAACTCTCAAATTGTGGAGTTTCTTTGACCCCAAAAATAATTCGGAAACACGCTTTTGATTTTTGCCAACAGAATAAGTTACATTGGATAAGACTGCCTGCAGTGCGAGCCCCGTGGACAGAAGACAGCTTACGAGCGGCAATGGTGGCAGTCCTCAAAGAGAACATGACCCAGCGAGCAGCAGCAACTTTGTACGGCATCCCTAGACAAACGCTTGCCGATCATTTGACGAAGGGGAGCATCGTGAAGCGTATGGGACGCCATTCGATCATGAACGAAGCACACGAAAGATGCCTTCTGAATAGACTAACAAGACTAGCCAATAACGGAGTGCCAATAACTCCACATCTAGTATGTTCTAGAAAAAGGTCATCAAAGCGGGTCCGGAAAAGAGCCGCGTGGACTGAAGAATGCTTACAAGCCGCTATGGCTGCTGTGAAGCGCGGTGACTTGCGCGTGCGCATTGCAGCTGAGCGCTACGGCATCCCGCGACGTACTCTATCCTCTCATATGAGAACAGGCAGCGATACCAAACGCTTAGGCCGCCGCTCTATAATGAACAAAGACCAAGAAATAAGTTTCATTAATAGAATTCTTAAAAAACTTTCAAATGAAACTACACCTCTCACTTCTGATAATTTCCATTTACCTACAGGTTCTATAGAAAGGTCTTCAAACCGGGTGCGGAAAAGGGCTGCGTGGACTGAAGAATGCTTACAAGCCGCTATGGCTGCTGTGAAACGCGGTGACTTGCGAATCCGCATTGCAGCCGAGCGCTACGGTATCCCGGAACGTACTCTATGCTCTCACATGAAATCAGGCAGCATTATCAAACGCTTAGGCCGCCGCTCTGTGATGAACAAAGACCAAGAAATAAGTTTCATTAATAGAATTCTAAAAAAACTTTCAAATGAAAGTACACCTCTCACTTCTGATGTTATTTGCAGACAGGCTTTTCTTTTCTGCGAAAAATACAATATAAAACATAATTTCAATATGGATTTGGGCCTCGCAGGGAAAAACTGGCTTAGAGCATTTTCAAAACGGCACCCAGATATTATATACGAAAAAGAAAGCTCAAAATAA
- Protein Sequence
- MGGKYPRYATVKGQHSDSIYRQQEHFISSSGPTFADAKTIGIPWEYVRKHGTWSEENLRDAMDAVKQKGLSLRQAANRYGVPRQTLADHLKTGNITKRLGRLSIMDEAQEKAFVNKITQLSNCGVSLTPKIIRKHAFDFCQQNKLHWIRLPAVRAPWTEDSLRAAMVAVLKENMTQRAAATLYGIPRQTLADHLTKGSIVKRMGRHSIMNEAHERCLLNRLTRLANNGVPITPHLVCSRKRSSKRVRKRAAWTEECLQAAMAAVKRGDLRVRIAAERYGIPRRTLSSHMRTGSDTKRLGRRSIMNKDQEISFINRILKKLSNETTPLTSDNFHLPTGSIERSSNRVRKRAAWTEECLQAAMAAVKRGDLRIRIAAERYGIPERTLCSHMKSGSIIKRLGRRSVMNKDQEISFINRILKKLSNESTPLTSDVICRQAFLFCEKYNIKHNFNMDLGLAGKNWLRAFSKRHPDIIYEKESSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -