Clig005419.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- -
- Assembly
- GCA_905163465.1
- Location
- LR990978.1:154145-156405[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.0007 2.3 9.4 0.0 47 86 102 141 96 142 0.82 2 5 0.02 64 4.7 0.1 49 84 200 233 162 236 0.80 3 5 0.11 3.5e+02 2.4 0.0 50 83 291 323 276 325 0.79 4 5 0.31 1e+03 0.9 0.0 2 31 369 397 368 405 0.84 5 5 0.0071 23 6.1 0.0 49 83 392 425 376 428 0.84
Sequence Information
- Coding Sequence
- ATGGATATAAACAATCCCCACAACCAAAGTTATTGGTTTGTCCTGAGAGAAGATCAGAGCAATGTCATATTCAGCAGCAATAATTTTACAATACAGAATCCTCAAATTACAGGACAGGAGGCAAGATATATTGTAGACACAGGTGACAACAGGCAATACATACAAATTAATGAAGCTCCTGTAGTCATCCAGGAAAATATATCTGAAAATAATGAGAAAGATGTAAAGCCCCAGGATGATGACAACTTCTGGGACAGGAACAAAATTAAAGTTCTGTTAACACTGTGCTTAGAGCACAGATTTAGAAACTTAACAAAGGATAAATCTTTATGGGATGAAATAGCTGTACACTTAGGCACAAATTCTGAGGAATGTAGTAAAAAATATAGGAACTTGAGAAGAACATATATTAGACTCTTGAAGAAAAAAAGACTTGGCAAAGAGATAAAATGGGTACATTATAATACTTGTGAAGAGGTATTCAAAGAATGCAAATCACTCCCACCTTCTGTGCTAGAACCCTGGGAAGAGCACAAAGTTAGAAGATTGCTTAGTCTGTACATAGAGAACCTTAACAAATTTCGTAGCCCAGATTGTTTGCAAAAAGATGTATGGAGGGAGATTTCATCTCAGTTAGGTACAACCGAGTACAACTGCTATCATAAGTTCAAGAACCTAAAGAGAGCATATCTCAATTGGAAAGAACGAAGTAGAGAAACAGGAAAACCAATAAAATGGCAGTATCATAATTATTTTGAGAGAATATTTTATAATTACAGTCCTAGCATAGGACCATGGAACAAAAGTAAAACTAGGTTGTTGATAGATGGATACATGCAAATAGCAGATAAGTTTAAAAATCCTAGATTTCAAAAGAAGGAGCTCTGGAAAGAAATATCAGTTTCAGTAGGAGAGAGCCCAACAGACTGTGATAAGAAGTTTCGGAATTTGAAACAAACTTACATAAGGTTGAAAATGAGAGCTGATAATGGGCGTTGCATTACCAAATGGCGCTATTATAAAGATTTTGAAGCAATATATGGTGGAATTACTAATTATGCCTGCACCATTGAAGGAGCACCCAAGATAACATACAAACCACATGAAGATGACTATGTCAAACAACTTTTAACGTTCTATGTAGAGAACAAGGAAAAATTTAGAAACCCACTAGTGAAAAAGAAAAATATTTGGAGATTGCTTGCTCCTAAGTTGGGTTTGTCTTCAGAAGAATGTGATCGCAAGTTCCGCAATTTGAAACAAACTTATATCAGGCTATCAGAGAAAAAGAAAGAAACTGGTAAAGATAACAACTGGCCATATTACTCGTATTTCGAAAAAATATTTGATGATCATAACATACAGAATACTTGCAGCCACGGTATCAACATAGATGACATGACACTAACAGAGATAAAGAGAGTAATGCAAGTGCATGACAGAAAAGATAACGACAAGTTTGAAATCCTAGTAAGGGCAGTAGAGGAGTCCAACAATATACAACGAGAAAGGAATAAAATACTACAAGCCCTTTTAGACAAAAAGTGA
- Protein Sequence
- MDINNPHNQSYWFVLREDQSNVIFSSNNFTIQNPQITGQEARYIVDTGDNRQYIQINEAPVVIQENISENNEKDVKPQDDDNFWDRNKIKVLLTLCLEHRFRNLTKDKSLWDEIAVHLGTNSEECSKKYRNLRRTYIRLLKKKRLGKEIKWVHYNTCEEVFKECKSLPPSVLEPWEEHKVRRLLSLYIENLNKFRSPDCLQKDVWREISSQLGTTEYNCYHKFKNLKRAYLNWKERSRETGKPIKWQYHNYFERIFYNYSPSIGPWNKSKTRLLIDGYMQIADKFKNPRFQKKELWKEISVSVGESPTDCDKKFRNLKQTYIRLKMRADNGRCITKWRYYKDFEAIYGGITNYACTIEGAPKITYKPHEDDYVKQLLTFYVENKEKFRNPLVKKKNIWRLLAPKLGLSSEECDRKFRNLKQTYIRLSEKKKETGKDNNWPYYSYFEKIFDDHNIQNTCSHGINIDDMTLTEIKRVMQVHDRKDNDKFEILVRAVEESNNIQRERNKILQALLDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00973738;
- 90% Identity
- -
- 80% Identity
- -