Clig021816.1
Basic Information
- Insect
- Craniophora ligustri
- Gene Symbol
- arid5b
- Assembly
- GCA_905163465.1
- Location
- LR990983.1:6941289-6956215[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-14 9.6e-11 42.6 0.1 3 89 242 315 240 315 0.88
Sequence Information
- Coding Sequence
- ATGAGCTCTGGTAACTTTACTCACTCGCAGAAAGACAACTATTGTAGTTTCACTGCGGTGTTCTGTAAGGCGGAGGACGAGGTACTCGCTATCAATGACAAGGTGGTGCTCCGAGCAGACGACCTGCTGAGCTGGGTGTGTGTTGGCACGGAGTGGCACTGGGGGCTGACGGCGGTGTGGCGCGGCGCCTGCGCCCCGCCCGCCGACCTGCCGCGCCACGCGCCGCTGCACCACACCAAGCTCGACTTCAGCGATGTCGCCAGTGAGAAGAGTAGCATCGAAGAGGACAAGGATGCTCCAGGCGTGGTGGTGTTCTCGTACCCTCGGTACTGCCGCTACCGAGCGCTCATCGCGCGGCTGGAGGGCATCCAAGCGTCCTGGCTGCGGGACTCGCTGGTGGCGGCGCTGGGCGGGTACGCCGCGCCCACCTGTAACACCAGGATCCTGTACTGCAAGGACACCTTCGAGTACCCCGAGCTGGAGGGCCACGAGTACGTGTGCAACCACCTGGCGCCGCGGCTGAAGGGGCGGCCGCGCGGGCGCCGGCGCCGCGCCGCGCTGTCGCCGTCGCCGGGCCGCGAGCCGCGCTCCGACACCGAGTCGCCGCCGCCCGCCGCCACCCACCCACCGACTCCTCGACGCCTATCCCTCCGTAACGGCGCTCCACAGCAGAGCGATGAGGAAGACGAAGATTACAAGAGAGTGGAGCAGACTCCAGAAGACCGCGCGTTCTTGCAGCAGCTGAAGACGTTCTACAAGAATCGGGGAGAGCCCTTCAAGAGCGGGCATACACTGAAGCATTTATCGCTACGAACATTATACCTGTCGGTGCGGGCGCGGGGAGGGTACGAGGCGGTGTGCCGCCACCAGCTGTGGCGCGCGCTGGCGCTGCACCAGCCCGCCAGGACCCGCAGGCACTACGAGAGGTTCCTTCTTCCCTTCGAGAACCACGAACGCCGAAACGGAAGCTCACTAGGCTTCAAAATGAACGGCAAGATTGACGTGGAACCTCACACCATAGCCACCATAGACGTGACCGACTCTCCCCTACGAGACGACGACGACAAGATCCTCCGCACCCCATCCCCCACCCCCAAACTCGAAACATACGACAAACTCGGAAACCCGGACGTCGACAGCGAAACTGGGGAGATAACATCGAAAGATGACATCATAGTTAAGAATGCAGAAGAGTTAAATAGAGAGTTCCTAGAATCTTTGCCCAAAGAAGAGAAAGTTATGAAGATATCTGTGAAGCCGGTCGAGAAGCTGATAGAACCTAATGCTGTGAAGATTTTTGAGGAGACCAGTATTACAGAAATAGCGAAACTCAATAACGATGCTATCAAGCCTGAAGATATGAGAGATCAGAATCAACACTATTTGAGTGGTATGCAGAAGATTGGAATCGACTTGGCAAACCGCGCGGCGCCGCTCAACGGCCACGCCGCGCCCGCGCCCGCACACCTGAAGGCGGGCTCGCTCCGCTCCCTGCGCGCCGTGCGCGTGAAGCCGGGCCGCGCCGCCGCGCCGCCGCCACTGCCGCCGCCCGACTCAGCACCGAACTCGCTGCGCTCGGAGTCGGTTCCGTCGTCCCCGCCGCTGGGCCTGTCCACGGTGGCGCCCCCCATCACTAACTTCGGCATCCACCACCCGCCGCCGCAGAACAGCTCGCATGTGGATGACGATATCGTTGAGGTACCCTACAAGCCTAAGACTCCCGAAATAATCGACCTCGACGAATACCCCGAAAGCCCCCAAGCAGTCAAGAAGAAGAAGCTCGACATCCTGAAGGAGCGGGGGCTGGAGGTGACCGCGCTGCCCCCCTGGCCCGGGGTCCCGCCACAGATGATGACCCCCCCGATAATGTTGAACCCGGCAGTCCAACACCAAATCATGACGCAAGCACAAATATTCCAAATGTATAATATTATTCCACCTAATTATGCGAACGGTATTCAACCGCCCAAAGTCGTGCAGGCATCCTCAATATTCGGTACTACAGGCCCCGAGAAAACCGTTTATGGCAATCCTAAAGACCCCTTCATGCCCCCACCCCACGTGATACACGGGGCCCCAGTCAAACCGCTGAGGACGGCACCCCCTACACAAATGACCCCTCAAGATATCCTGGACCTGACCTGTAAAACTAGCAGCCCCCCTCCACAACAGCCTGCCGTGGAAATAGTCAGAGTACCCCCCTCACCCTCCCCCAACCACACAGCTCAGAATTTATCAAAGAATTATACTTTAGTTGACGGCAAAGCGGTGGTCGGATCGAATTTAGAAATAACGTTAGTCAATAAAGCTCAAAGTCCCGGGAAGAATAGACCCCCGCAGAAACGGTCGAGCAACGGGAAGTTCATGTCAGCGAAGACCCCCACTCCCCCGAAGGAGGCCTACCCTAAGTACACCAGCCCCTCGCACACGAGCACCCATAAAAAACCCCCCATCAACATCCCCAACTACCAAATCCGCGAGGACACCCCCCCAAACCAAAATCAAATCATACAAAACGCAATGAAGAATCAGAATCTAGCTCAAATCATGGATTTACAAAAGAATTCAGTTCCTATGACCTCATTTATGGACCCCTACATGGCTCTGTACAGTAGTCTAGCGGGTCAGATGGACCCCAGACAGCTGGCGATGTACCGCGATCTAATGACCAACCAATTCCGAGGGTACCCCGGGTTATTAAACTTGGGGGTCTCCAGCACACCGACAACGAAAAATTAG
- Protein Sequence
- MSSGNFTHSQKDNYCSFTAVFCKAEDEVLAINDKVVLRADDLLSWVCVGTEWHWGLTAVWRGACAPPADLPRHAPLHHTKLDFSDVASEKSSIEEDKDAPGVVVFSYPRYCRYRALIARLEGIQASWLRDSLVAALGGYAAPTCNTRILYCKDTFEYPELEGHEYVCNHLAPRLKGRPRGRRRRAALSPSPGREPRSDTESPPPAATHPPTPRRLSLRNGAPQQSDEEDEDYKRVEQTPEDRAFLQQLKTFYKNRGEPFKSGHTLKHLSLRTLYLSVRARGGYEAVCRHQLWRALALHQPARTRRHYERFLLPFENHERRNGSSLGFKMNGKIDVEPHTIATIDVTDSPLRDDDDKILRTPSPTPKLETYDKLGNPDVDSETGEITSKDDIIVKNAEELNREFLESLPKEEKVMKISVKPVEKLIEPNAVKIFEETSITEIAKLNNDAIKPEDMRDQNQHYLSGMQKIGIDLANRAAPLNGHAAPAPAHLKAGSLRSLRAVRVKPGRAAAPPPLPPPDSAPNSLRSESVPSSPPLGLSTVAPPITNFGIHHPPPQNSSHVDDDIVEVPYKPKTPEIIDLDEYPESPQAVKKKKLDILKERGLEVTALPPWPGVPPQMMTPPIMLNPAVQHQIMTQAQIFQMYNIIPPNYANGIQPPKVVQASSIFGTTGPEKTVYGNPKDPFMPPPHVIHGAPVKPLRTAPPTQMTPQDILDLTCKTSSPPPQQPAVEIVRVPPSPSPNHTAQNLSKNYTLVDGKAVVGSNLEITLVNKAQSPGKNRPPQKRSSNGKFMSAKTPTPPKEAYPKYTSPSHTSTHKKPPINIPNYQIREDTPPNQNQIIQNAMKNQNLAQIMDLQKNSVPMTSFMDPYMALYSSLAGQMDPRQLAMYRDLMTNQFRGYPGLLNLGVSSTPTTKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00017965;
- 90% Identity
- -
- 80% Identity
- -