Clat017714.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- stc_1
- Assembly
- GCA_949710035.1
- Location
- OX453302.1:26863292-26884188[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.9e-07 0.022 16.5 14.1 3 19 30 46 22 46 0.87 2 8 0.019 6e+02 2.4 0.6 4 10 55 61 54 61 0.92 3 8 1.8e-06 0.059 15.2 15.0 3 19 69 85 67 85 0.92 4 8 0.91 2.9e+04 -3.0 0.5 6 10 115 119 114 119 0.78 5 8 0.016 5.3e+02 2.6 17.3 1 18 125 141 125 142 0.89 6 8 0.45 1.4e+04 -2.0 1.3 8 13 147 152 146 153 0.79 7 8 4.3e-08 0.0014 20.4 14.8 1 17 178 196 178 202 0.85 8 8 0.00042 14 7.6 13.4 1 19 208 231 208 231 0.86
Sequence Information
- Coding Sequence
- atgtcgatcttttccgaacatagaCGGTTAGTCTTCTTGACGTCGTACCGCTGCGCGGTTGTATGCGGTCGCACTCTCTCCTGCCAGACGCACCGCTGTGAGGAGTTCTGTCACACCGGACACTGCGCGCCTTGCCCGAGACTAGTCTTCTTGACGACGTCGCACCGCTGCGCGGTTGTATGCGGTCGCACTCTCTCCTGCCAGACGCACCGCTGTGAGGAGTTCTGTCACACCGGACACTGCGCGCCTTGCCCGAGACTAGGCTGTTTCGACGAGCTCCGTTGCGCTTGCGGGGAGCAAGCGTTGCTCCCCCCCGTGGCTTGCGGCGCCCGACCGCCGGCGTGCTCGGCGCCATGCCGGCGCCTGCGGCCCTGCGGACACGAACCTCACCACTCGTGCCACCAGGGCGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGAGGGCACGAGGAACGCAAGACGATACCATGCTCGCAGGACGAGTTCTCGTGCGGCCTTCCTTGCGGCAAGCCGCTGCCCTGCGGCAAGCATACCTGCATCAAGACCTGCCACACGGGGCCCTGCGATACTGGCAAGTGTACCCAGCCGTGCATGGAGAAGCGTCCCAGCTGCGGGCACCCGTGCTCGGCGCCGTGCCACTCCAGCGCGGGCGGCCCGTGCCCGTCCGCCGCTCCGTGCAGGCGGCCCGTGCGCGCCACCTGCCCGTGCGGCCGCCGCTCCGCAGAGCGGGCCTGCTGCGAGAACGCGCGCGACCTCGCCAGaatCATGAGCGCATTGGTGGCAACTAAGATGCAAGAAAGTGGATCCGTTGACTTGTCGGAAGTGCAGCGTCCGGTCAACATGCTCAAGACtTTGGAATGCGACGACGAGTGCCGCGTGGAGCAGCGCACCCGCCAGATGGCTTTGGCGCTACAGATCCGCAACCCCGACGTTTCGTCGAAGCTTGCGCCGCGCTACAGCGAAGGGCTGCGCGCCACGGCCGCGCGCGAGCCCGCCTTCGCGCACCAGGTGCACGACAAGCTGACGGAGCTAGTGCACCTCGCCAAGAAGGTATCTAGTAGTGTGTACAGCGACGGGCTGCGCGCCACGGCCGCGCGCGAGCCCGCCTTCGCGCACCAGGTGCACGACAAGCTGACGGAGCTAGTGCACCTCGCCAAGAAGGTGCCCATGCCTGGTACATTTGATCCAAGTTCCAAgtcttccaatttctttgatcaaatgcacattggacaaagatatttgatGAGTAGACTACCGTAG
- Protein Sequence
- MSIFSEHRRLVFLTSYRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRLVFLTTSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRLGCFDELRCACGEQALLPPVACGARPPACSAPCRRLRPCGHEPHHSCHQGDCPPCVVLTTKRCHGGHEERKTIPCSQDEFSCGLPCGKPLPCGKHTCIKTCHTGPCDTGKCTQPCMEKRPSCGHPCSAPCHSSAGGPCPSAAPCRRPVRATCPCGRRSAERACCENARDLARIMSALVATKMQESGSVDLSEVQRPVNMLKTLECDDECRVEQRTRQMALALQIRNPDVSSKLAPRYSEGLRATAAREPAFAHQVHDKLTELVHLAKKVSSSVYSDGLRATAAREPAFAHQVHDKLTELVHLAKKVPMPGTFDPSSKSSNFFDQMHIGQRYLMSRLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -