Clat039247.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- nfxl1
- Assembly
- GCA_949710035.1
- Location
- OX453313.1:18680743-18683217[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2 6.5e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 18 0.01 3.4e+02 3.2 0.3 4 10 169 175 168 176 0.97 3 18 3.1e-07 0.01 17.6 15.9 3 19 186 202 185 202 0.95 4 18 4.1e-09 0.00013 23.7 12.4 1 19 237 255 237 255 0.93 5 18 0.67 2.2e+04 -2.6 1.4 6 10 280 284 279 284 0.89 6 18 3.2e-09 0.0001 24.0 10.9 1 19 290 308 290 308 0.99 7 18 1.9e-06 0.06 15.2 19.6 3 19 345 361 337 361 0.86 8 18 4.8e-07 0.015 17.1 16.3 1 18 395 412 395 413 0.97 9 18 5e-10 1.6e-05 26.6 13.0 1 19 422 440 422 440 0.99 10 18 7.7e-05 2.5 10.0 4.1 9 19 488 498 486 498 0.90 11 18 0.019 6.2e+02 2.3 7.6 3 12 509 518 508 518 0.90 12 18 0.31 1e+04 -1.5 3.5 14 18 547 551 547 552 0.87 13 18 0.15 4.9e+03 -0.5 0.4 7 12 567 572 567 572 0.84 14 18 3e-05 0.96 11.3 3.6 1 11 588 598 588 599 0.97 15 18 2.3e-05 0.73 11.7 11.5 4 18 630 645 628 646 0.86 16 18 2 6.5e+04 -6.5 3.4 9 13 652 656 652 656 0.71 17 18 5.4e-06 0.17 13.7 10.2 1 17 687 702 687 707 0.88 18 18 1.2 4e+04 -3.5 0.8 6 10 737 741 736 741 0.89
Sequence Information
- Coding Sequence
- ATGGCCCGACGTTACCGTGATGCGGCCGCAAAACTCCAACAAAACGTGCAAAAGCATTTGAAAGGTATGAAAGAACTGTCGTCCTCTGAGGACGAAGAGCCGTACGAATCGAGTGTTCTGGATGGCGTGTTTCAGTCGTATAGGAGAGGAGGGGGTGACACCAACATGTTGGATAGAACCAGGCATCTGCTAGAAGAAGCGATGAGCGGCAGATCAGTCACTTGCCTCATCTGTATAGGGTCCATTAAGCGAGCAGACGCTATATGGACCTGCGATCACTGCTACTGCTACTTTCATTTGTTGTGCATACAAAAATGGGCTAACGATAGTGTCAGTCTTCGAAGTGAAGATAGTCAAGGCCCTATTGCTGTTTTCATGCCTAGAAAAGTCGAATGGTGCTGCCCTAAATGCCGGCAGTCGTACGGGAAAGAGGAAATACCCCGACGCTATAGATGTTATTGTGGAAATACTGATGATCCTCTCTACCATCCTTGGCTAATACCGCACACTTGTGGAGAAGTGTGTGGGAAGAGACTATCAGTTGGCGATAATTGTAAACACAAGTGCCTATTGCTCTGCCACCCGGGGCCTTGCCCACCGTGCCCACAAACAGTGAATGGAGTGTGTTACTGTGAAAAAGAATGTAAGAAGGTTAGATGTAGTTCTGCCAAGTGGTCTTGTGGACAGCAGTGTAAGAAAATGCTATTGTGTAACTCccataaatgtgaaaatatttgCCATGACGGAGATTGTCCTCCCTGCAGCTATGTAAGCATACAGTCGTGCCAGTGTGGTGCAGAGAAAACAAAACGTCCATGCAACAATCCTCACTGGCAGTGTCAGAATGTTTGTAATAAACCCTTCAATTGTGGCTATCACAAATGCTTGCAAATGTGTCATTCTGGTGATTGTGGGGTTTGCCCTAACTCAGGCATGAGATCATGTCCGTGTGGGGCAAATCAGAAGTATGTGGAGTGTCCAGATGTTATGGAAACATGCCTAGGAACTTGTGGTAAGAAGCATGAATATTGTGAACACAACTGCCCCGAGAAATGCCATAAAGGTCCATGCCCTCCTTGTCAAGTTTTAATTGAAAAGCAATGCCTATGTTTGGCGCATACAAGAATGTTGCCTTGTAGTAAAGAATATAAGTGTGATACTAAGTGTAGAGGCACTAGGCTATGTGGCAAACATGCTTGTGCCCGTAAATGCTGCAACGGAAACTGCCCTCCATGTGAGAAAGTATGTGACAAACCTCTACAGTGTGGTAGGCATAAATGCACAATGGTATGTCACCGTGGACCTTGCTATCCTTGTCCGAGAGAATCTAAGGTGACCTGCAGATGTAAGGAAACTTATGTAACAGTGCTATGTGGAAGAGAGAAACATATAAAACCTCCTAGGTGCAGTTTACCTTGCAAGATGAAGTATAAATGTGGCCATGTTGATGAGAACAGTCATTTGTGCCACTTTGGCGATTGCCCTTCTTGCAAAGCTATCTGCAGCAAGACTTATTTGAAATGTGAACATCAGTGTAAAGCTGTATGCCATGAATATGTTGCAGTGGTGTTTAAACAGGTTGAGAAGCCTGCCACGCCATGGGAAATTACTCCtcctaaaacaaaaataatgacattggaTTGCCCACCATGTGAGACACCTGTCTCTATCATATGCTTTGGTGAACATGAGACTGAAGAGCAGCCATGTCATTCAGCTAAAAGACGTTGCTGTGGCAGGAAGTGTGGTCGTCCATTGGCTTGTGGCAACCATTCCTGTTTGTTGTTATGTCATTTATATGCACCGAATCCTGATTTCCCGAATGTGCCTTATAGTTGTAGACAGTGTGACAGAGAATGTGCTGTCACCCGTCCTGGTAAGTGTCTACATAAGTGTGCAGTACGGTTCTGCCATTCTGGACCCTGCCCACCATGTGAAATACTTGAACGCATACCTTGTCATTGCGGAGTGACAGAGTTATATTTGCGATGCCGAGAAGTTTCCACTGCTACTGAGGAAATATTGTCTTGTAAACAGCAGTGTCCTAAAAACTTGGAATGTGGTCATCGCTGCAGGAACAATTGTCATTCTGGCTCTTGTCAGTCTAATCAGGTATGTAATAAGAAGACCAAAGTGCATTGTCCGTGTGGAAACTTACGAAAGGAAGCACCATGTAATCTTGTGAGAAATGGTGAAGTGGAAATAGCATGTAATGAGACTTGTGGggcaaaaaaaattgctgctAAATTGGAGAGAGCAAAAGAAGAACAGAGATTGAAAGAGTTAGAGGAGGAAAAGAACCGTAAAGAATTAGCAGAATATGAATGGAAATTGAGCGGTAAAAAGAAGAAGTATAAGGAAAAGAAAGTTCTTCAAAATGTCGACAATAGAAATGTTATACAAAAGTACTGGGTTCCTATTTTAGGTCTAGTAATTGCAATAGTTGGTGCTCTTTACATGATTGTAGAAGTATAa
- Protein Sequence
- MARRYRDAAAKLQQNVQKHLKGMKELSSSEDEEPYESSVLDGVFQSYRRGGGDTNMLDRTRHLLEEAMSGRSVTCLICIGSIKRADAIWTCDHCYCYFHLLCIQKWANDSVSLRSEDSQGPIAVFMPRKVEWCCPKCRQSYGKEEIPRRYRCYCGNTDDPLYHPWLIPHTCGEVCGKRLSVGDNCKHKCLLLCHPGPCPPCPQTVNGVCYCEKECKKVRCSSAKWSCGQQCKKMLLCNSHKCENICHDGDCPPCSYVSIQSCQCGAEKTKRPCNNPHWQCQNVCNKPFNCGYHKCLQMCHSGDCGVCPNSGMRSCPCGANQKYVECPDVMETCLGTCGKKHEYCEHNCPEKCHKGPCPPCQVLIEKQCLCLAHTRMLPCSKEYKCDTKCRGTRLCGKHACARKCCNGNCPPCEKVCDKPLQCGRHKCTMVCHRGPCYPCPRESKVTCRCKETYVTVLCGREKHIKPPRCSLPCKMKYKCGHVDENSHLCHFGDCPSCKAICSKTYLKCEHQCKAVCHEYVAVVFKQVEKPATPWEITPPKTKIMTLDCPPCETPVSIICFGEHETEEQPCHSAKRRCCGRKCGRPLACGNHSCLLLCHLYAPNPDFPNVPYSCRQCDRECAVTRPGKCLHKCAVRFCHSGPCPPCEILERIPCHCGVTELYLRCREVSTATEEILSCKQQCPKNLECGHRCRNNCHSGSCQSNQVCNKKTKVHCPCGNLRKEAPCNLVRNGEVEIACNETCGAKKIAAKLERAKEEQRLKELEEEKNRKELAEYEWKLSGKKKKYKEKKVLQNVDNRNVIQKYWVPILGLVIAIVGALYMIVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00683858;
- 90% Identity
- -
- 80% Identity
- -