Clat047735.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- ZIPIC_2
- Assembly
- GCA_949710035.1
- Location
- OX453318.1:9578732-9603858[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00017 0.028 16.6 3.7 1 23 267 289 267 289 0.98 2 11 4.5 7.5e+02 2.7 1.7 1 23 297 320 297 320 0.92 3 11 0.0076 1.3 11.4 5.2 1 23 421 443 421 443 0.99 4 11 0.01 1.7 11.0 1.2 2 23 452 474 451 474 0.95 5 11 1.2 2e+02 4.5 2.9 1 23 478 500 478 500 0.96 6 11 0.0015 0.25 13.6 2.2 1 23 505 528 505 528 0.98 7 11 0.17 29 7.1 2.0 1 23 532 555 532 555 0.87 8 11 6.7 1.1e+03 2.1 0.0 2 20 575 593 574 595 0.90 9 11 0.73 1.2e+02 5.2 0.3 2 23 647 669 646 669 0.89 10 11 2.9e-06 0.00049 22.2 1.0 1 23 678 700 678 700 0.98 11 11 9.1e-05 0.015 17.4 0.4 1 20 706 725 706 727 0.96
Sequence Information
- Coding Sequence
- ATGCGAGACTTAAAAGCGTGTATAGTATGTTTCACAACGGATGTCAAGTTGTTATGCATGGATAATAATAAGTTACGGCAACAATACAATTTGCTAACTGGTCTTCAGCTCAAGAAAGGCAATGGGATGCCAGAGTATTTATGTTATCAATGTTGCGGCTATGTGACAAGTTTCATTAAGTTTCGTGATAAGTGCCATAGAGCCTATTTTGTTTTAGAACAACTACTTCAAAAGGATAATGAGatCCAAAAAAAAAGATTAGAGGCTGTTGATTGTGATTCAATCAGTATTAAACCATGTCTATCATacttaaatgtaaataaatcacATTATGAACAGCACAAGTTCAAATGGAAGAAAGATAATCGACACGTTAATTTAATCCGTGATGTGATCCCAATCGTGACACACACAACTCTTACGAAAGAACAGATGTTTGAAGATATTGCATATGGAAGTTTGATAAAAAAGGATGAGAATGAAAGCATCGCTATGATAGAAATTGATATGAGTGCCCCTGTAAACAATTCTTATAGTGATGATGACATAAATGCACAATCTTCTAGTTTTAATGCTGACAATACTGAAACTttagatgataatgataatgacaaCTATTTAGACAGTGATGATAATGCAAATATGACCCTTCCGGTTAAAAGTATAGAAAAAGTATTTAACAAGAATCAAGAAGCAGATGGCAGTGTTCTAGAAACAGAGTATGCAACTATGCACGCTATCTCGAGGAATGAAGCCCAAGCAGCTTTAGAGATAACAAAATCAATTGGATTTGGGAAATTTAATTGCAATGTGTGTGATAGACATTTCAAAAATGACGACCGTTTGAAGACACATTTACGTATGCATGataagCATATAAGTGGTTCCTATTtctgtgatttatgtatttattattacaagTCAATCTTTCTATTAAAAACACACATGACAGAAAAACATATGTATAAATATGTATGTAAAAAGTGCCCTGAAGTGAATTTCGAAAGGAGGAAAGCTAAACAGCATTACATTCTAGCTCATTTGCATAAAAAGGAAATAACCGATGAAGCGTGGGAATTATCGCGGCCCAGTTGGCTTATGGCAAAAGGCGGAAGGCGTATAAAAGGAACAAGCACAAAGTTACCAAAGCGCAAGCCGTCTACACTGCCCGGCGATCTTGTATACACACCAGTGTCGCAAAAAGATCAGTATGCGTTAATCCAAGACAGGAAAAACTCACGTAATTATACAGAAGCACCGTTTAAATGTGACCTGTGCTTTAGAGGGTATAGAGAGCATGACACCTACAACAAACATATGAAAAAACACGATCCAgCAATATCTGGTGCTTTACAGTGTGATATGTGTAAACTATATTTCAAGGACGCTAGAAAGATGTACAAACACATGACTATTTCACATATAGCAAAATTTTCTTGTGAGTTGTGCAGTTTTGTTTGTTACAATAgAGGGCAAGCAATCACCCATTACAAATTTCACAAAAATGTGACATACAAGTGTCCACACTGCCCTTTGGAATTCAAGAAGCTGTCGACGCGGCTAACCCACGTGCGGATCAAGCACCCGTCGTCGTTCATCTGCAACCTGTGCGGGCACAGCTTCGTGAGCGACTCCGGACTGTACTGTCACAAGCAGATCGCTCATACGGCCgagGAGATGCAGTCGAGTTCACAGGCTCCGGTAGACAAAACCAGTTCGCTATACTGCGCGGACTGTAATATACTCTTCATCAGCGACGTGGCGTTTGAAACCCACCTCGGCAGCTCTAAGAAGCACGTCACTACTAACTTCTCAATAACATCATCGGTGCGCGAGCGGGCGCGGCAGGCCCGGGCCAAAACGCGCCGGTCGGAagtccgccgcccgcgccgctccGCCGCCTCCGAGATACTCAACAACGGCGTCGCCACCGCCACCACCTGCGAGATATGCAACAAATTCCTAGAAAACGATGTGCAAGCCCGCAAGCATTACTCCGCAGAGCATCCCGGCAGCGAGTACCTCAAACGATACATGTGCGACGTGTGCGGACACACCACTAAGCAATACGCCAACCTGATAGTCCACATGCGGACGCACACGCACGAGAAGCCGTACCAGTGCCCCCACTGCGACCGGCGGTTCAGCATGCCCAGCAACCGAGACAGGCACATCGTGAATGAAATAAATAGGAAAGAAAAACGAAGGACACGCACGCGCGCACTTGTTCTGCTCTTGCACTGCACTGCCCTTGCGTTCACTCACACGAGTCCAGCCACAAGACAGACAAGCGAGAAAGGTGGTGGGGGAACAAACTGCCCCGAAAAAATAGACCGGCGAGCTATTAACTGTTCTGCCTTGATTACTGTCAAGACAGTTCTGTTCTGTGCGTTCAAATAG
- Protein Sequence
- MRDLKACIVCFTTDVKLLCMDNNKLRQQYNLLTGLQLKKGNGMPEYLCYQCCGYVTSFIKFRDKCHRAYFVLEQLLQKDNEIQKKRLEAVDCDSISIKPCLSYLNVNKSHYEQHKFKWKKDNRHVNLIRDVIPIVTHTTLTKEQMFEDIAYGSLIKKDENESIAMIEIDMSAPVNNSYSDDDINAQSSSFNADNTETLDDNDNDNYLDSDDNANMTLPVKSIEKVFNKNQEADGSVLETEYATMHAISRNEAQAALEITKSIGFGKFNCNVCDRHFKNDDRLKTHLRMHDKHISGSYFCDLCIYYYKSIFLLKTHMTEKHMYKYVCKKCPEVNFERRKAKQHYILAHLHKKEITDEAWELSRPSWLMAKGGRRIKGTSTKLPKRKPSTLPGDLVYTPVSQKDQYALIQDRKNSRNYTEAPFKCDLCFRGYREHDTYNKHMKKHDPAISGALQCDMCKLYFKDARKMYKHMTISHIAKFSCELCSFVCYNRGQAITHYKFHKNVTYKCPHCPLEFKKLSTRLTHVRIKHPSSFICNLCGHSFVSDSGLYCHKQIAHTAEEMQSSSQAPVDKTSSLYCADCNILFISDVAFETHLGSSKKHVTTNFSITSSVRERARQARAKTRRSEVRRPRRSAASEILNNGVATATTCEICNKFLENDVQARKHYSAEHPGSEYLKRYMCDVCGHTTKQYANLIVHMRTHTHEKPYQCPHCDRRFSMPSNRDRHIVNEINRKEKRRTRTRALVLLLHCTALAFTHTSPATRQTSEKGGGGTNCPEKIDRRAINCSALITVKTVLFCAFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -