Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453313.1:17057256-17081382[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.8e-05 0.013 17.7 0.9 1 20 316 335 316 339 0.96

2 9 0.0061 1 11.7 5.7 3 23 348 368 347 368 0.98

3 9 0.00012 0.02 17.1 6.4 2 23 400 421 400 421 0.98

4 9 0.0015 0.26 13.6 0.5 1 23 425 448 425 448 0.96

5 9 0.36 61 6.1 0.4 2 20 462 480 461 482 0.92

6 9 1.4 2.4e+02 4.2 9.4 2 23 553 575 552 575 0.89

7 9 5.1 8.6e+02 2.5 0.5 3 21 589 610 587 611 0.61

8 9 5.5e-07 9.3e-05 24.4 1.0 1 23 614 636 614 636 0.98

9 9 8.6e-06 0.0014 20.7 1.2 1 23 642 665 642 665 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.8e-05	0.013	17.7	0.9	1	20	316	335	316	339	0.96
2	9	0.0061	1	11.7	5.7	3	23	348	368	347	368	0.98
3	9	0.00012	0.02	17.1	6.4	2	23	400	421	400	421	0.98
4	9	0.0015	0.26	13.6	0.5	1	23	425	448	425	448	0.96
5	9	0.36	61	6.1	0.4	2	20	462	480	461	482	0.92
6	9	1.4	2.4e+02	4.2	9.4	2	23	553	575	552	575	0.89
7	9	5.1	8.6e+02	2.5	0.5	3	21	589	610	587	611	0.61
8	9	5.5e-07	9.3e-05	24.4	1.0	1	23	614	636	614	636	0.98
9	9	8.6e-06	0.0014	20.7	1.2	1	23	642	665	642	665	0.96

Sequence Information

Coding Sequence: ATGTTCGACTTAAAAGTATGTCGAATATGCCTTCGTGGCAAGACAAAATTTTATAAGATTGATATGtatgatctaaaaaaatattatgaagaaATTATGTCTTTACCTATCAGTAAAGTGGATGGTCTGCCTCAGTATTTTTGTTTCGAGTGTGCTACGACTTTGAATAAGTTCCATTTGTTCAGGGAAAAGTGTTACTACAGCCACAATGCACTCACACAAAAACTGAGGAATGGAAagATCACACAGTCAGCGATAAATagtataaaatcaaaacaaagtCCAAAGCTAACTTATGGTATGCTACAGATATTGATTAGAAGTAAGAGGGTAGGCACATATGTCTTTGACCATACTGCTGATGATGAAGAAAAGCTAGATAATGTTAAACATGAGTCTATGTATATAACTTATTCGGACAACTCATTCTCTGATGCAGAAAGTGTAAATGATAAAATTGATATACCAGATTCTGAGCCAGAAATGTTATTAGTCACAAATACTAAGGATATTGTAAGACCAGTCTCTGAGCCAGAATTGTTGCTAGATGTAGATACAAAAGATAATTATGACAGTCTCTCACTGACCAACAATGAAGTTATTGAAACAGAGCCTCTAAAAGTTGAAAAggttattaaaaagaaaaagcaaATCAAATCAACTAGAAAAACCAGACTATCAAagataaaaaccagaaaaaggaaAACGGTAAAAAAAGTTAAAGACGACGACACTGACTCCGATGACGAAGTATTAGCTAACAAAAAAAGGAATGCTGCATCACTAGAACGAAAAAACGTTGAATTCACTAAAGCTAAAGGTGGAAAACTAAAGGTTATGAAATTCTTAGATTCTGGTTTTTGGAAGAAATCATTTTTGTCTGATGAAGAAGCTATGGAGGAATTTCAGGCTAAAGCACAAGATAAGAAGTATTTAAGAGCAGCTTATAAGTGCACTGATTGTTATAGAGGATTCTCACAGAAAAGTATGTTGGATAGGCATATACCACTGAAACATGGAGAGGCACTTGGTCCTTTGCTATGCCGGTTCTGCAAATGTCGATTTAAGACAGCTTACTTCTTAAATAAACACATGAGACTGCACTACACAAAGTATGAATGCTTGCGATGTAACTTAGTTTGTAATATAGAtaaatctgCATTATTTCACGAGGAATATCATAATGGTGTCATAAGGAAGTGTCCTCATTGTGATAAAGAATTCAAacATATGTCTACGTTCTACACGCATCTACGAACGCATAGGAGCAAACACATGTGTCCGCGTTGTGGAGAATCGTTCGTCAGCGAACTTGGACTATATCTTCATCAGAAAGTCAAACATATAACTGATACTGGGATAGTTGACGTAGATGGCAGCACCTACTGTGACGTGTGTAAAATCAAGTTCGACACCACAGAAGCTTATGACAAACATCTCTTACATTCGGCTATGCACACGGAAGACAAACTACTTGAAGATACTTCGTCGAAAGATATTTTGAAAGATGATGCGGATATAGAGTTAAAAGATGATGAAGAAAATCAAAATTCAGAGGAACTATATACAAGGAAATCGAGAGTTGAAAAAACATTATCGGCAGTAAGGAAACGGAATCTCAATAAAGCACCACCGAAAGTCGCTAAGAAACCTACATCTTGTCAACATTGCGGGAAACACTTCGAATCTCAGTCTGCGTGTATGAAGCACCATCATGCTGAGCACCCGAGGAAGCCATTTTACTCGCCAAAAGACAGAGTTATATGCGAAATATGCGGCACTTCTTTAGCGCCAAGCAGTGTGCCCGCCCATCTGAACCAACACACGCGCCGCAAGATGTACACGTGCGACACCTGTGGCCGATCGTTTACGACCAACAACATGCTCAGGAATCATATAGTGACACATACTGGAGAACGACCTCACGCTTGCAACATGTGCGGAAAGCGTTTCGCACAGAGCGGCAGCTTAAGTCTCCACAAGAGGACTGTTCATCTGAAACTGCCTTATCCTAAGAGaaatagaAGAAAAAGAATAGAAGAGCCTAACACCGAGTCTGGACCCTTCGGCGTCAAAGACGAGTACAGGGTGTGGCGAAATTACTTTGAAAACTCTACTTATACTAATTCTTAA
Protein Sequence: MFDLKVCRICLRGKTKFYKIDMYDLKKYYEEIMSLPISKVDGLPQYFCFECATTLNKFHLFREKCYYSHNALTQKLRNGKITQSAINSIKSKQSPKLTYGMLQILIRSKRVGTYVFDHTADDEEKLDNVKHESMYITYSDNSFSDAESVNDKIDIPDSEPEMLLVTNTKDIVRPVSEPELLLDVDTKDNYDSLSLTNNEVIETEPLKVEKVIKKKKQIKSTRKTRLSKIKTRKRKTVKKVKDDDTDSDDEVLANKKRNAASLERKNVEFTKAKGGKLKVMKFLDSGFWKKSFLSDEEAMEEFQAKAQDKKYLRAAYKCTDCYRGFSQKSMLDRHIPLKHGEALGPLLCRFCKCRFKTAYFLNKHMRLHYTKYECLRCNLVCNIDKSALFHEEYHNGVIRKCPHCDKEFKHMSTFYTHLRTHRSKHMCPRCGESFVSELGLYLHQKVKHITDTGIVDVDGSTYCDVCKIKFDTTEAYDKHLLHSAMHTEDKLLEDTSSKDILKDDADIELKDDEENQNSEELYTRKSRVEKTLSAVRKRNLNKAPPKVAKKPTSCQHCGKHFESQSACMKHHHAEHPRKPFYSPKDRVICEICGTSLAPSSVPAHLNQHTRRKMYTCDTCGRSFTTNNMLRNHIVTHTGERPHACNMCGKRFAQSGSLSLHKRTVHLKLPYPKRNRRKRIEEPNTESGPFGVKDEYRVWRNYFENSTYTNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -