Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453319.1:12925080-12931603[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 8 1.4e+03 1.9 4.2 1 19 172 190 172 195 0.95

2 18 6 1e+03 2.3 0.1 1 23 221 244 221 244 0.94

3 18 0.0011 0.19 14.0 3.8 1 23 292 314 292 314 0.99

4 18 0.13 23 7.5 1.7 1 23 319 342 319 342 0.90

5 18 0.61 1e+02 5.4 3.1 2 22 351 371 350 373 0.82

6 18 0.0046 0.78 12.1 1.1 2 23 381 403 380 403 0.95

7 18 1.6e-06 0.00026 23.0 1.9 1 23 409 431 409 431 0.97

8 18 8.8e-06 0.0015 20.6 0.6 1 23 437 459 437 459 0.99

9 18 0.00074 0.12 14.6 3.1 1 21 465 485 465 486 0.96

10 18 0.12 20 7.6 4.5 1 19 635 653 635 658 0.95

11 18 0.97 1.6e+02 4.8 0.1 1 23 684 707 684 707 0.96

12 18 0.015 2.5 10.5 0.8 1 23 755 777 755 777 0.95

13 18 0.2 34 6.9 2.7 1 23 782 805 782 805 0.89

14 18 0.27 46 6.5 1.1 2 20 814 832 813 836 0.79

15 18 0.0099 1.7 11.0 3.9 2 23 844 866 843 866 0.96

16 18 0.0016 0.26 13.6 4.8 1 23 872 894 872 894 0.96

17 18 2.6e-05 0.0044 19.2 0.6 1 23 900 922 900 922 0.99

18 18 0.00022 0.037 16.3 4.9 1 23 928 951 928 951 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	8	1.4e+03	1.9	4.2	1	19	172	190	172	195	0.95
2	18	6	1e+03	2.3	0.1	1	23	221	244	221	244	0.94
3	18	0.0011	0.19	14.0	3.8	1	23	292	314	292	314	0.99
4	18	0.13	23	7.5	1.7	1	23	319	342	319	342	0.90
5	18	0.61	1e+02	5.4	3.1	2	22	351	371	350	373	0.82
6	18	0.0046	0.78	12.1	1.1	2	23	381	403	380	403	0.95
7	18	1.6e-06	0.00026	23.0	1.9	1	23	409	431	409	431	0.97
8	18	8.8e-06	0.0015	20.6	0.6	1	23	437	459	437	459	0.99
9	18	0.00074	0.12	14.6	3.1	1	21	465	485	465	486	0.96
10	18	0.12	20	7.6	4.5	1	19	635	653	635	658	0.95
11	18	0.97	1.6e+02	4.8	0.1	1	23	684	707	684	707	0.96
12	18	0.015	2.5	10.5	0.8	1	23	755	777	755	777	0.95
13	18	0.2	34	6.9	2.7	1	23	782	805	782	805	0.89
14	18	0.27	46	6.5	1.1	2	20	814	832	813	836	0.79
15	18	0.0099	1.7	11.0	3.9	2	23	844	866	843	866	0.96
16	18	0.0016	0.26	13.6	4.8	1	23	872	894	872	894	0.96
17	18	2.6e-05	0.0044	19.2	0.6	1	23	900	922	900	922	0.99
18	18	0.00022	0.037	16.3	4.9	1	23	928	951	928	951	0.98

Sequence Information

Coding Sequence: atgatgatgatgatgatggaagaCGTGCAACTAACTCCAACCAAGGCCTACTATAACAACAACGGTAACCGGTGTGGTACAACTAGTATAGATGACGTAGATGTAAGTACATTACTACTCAACAAGTTCCTCAAAACTAAGCCTGCAGTGGAAAAGAACGACGGGTCTGTCAATATTAAGGGTGCCCCTATACAAAGTAAGGGTGTTGGATCATCGATTGATACGATACCGAAAATAATCTTGAGAGGTGTAACCACGAAAGTTCTCCCTCTTCCAAAAACGAAAGTGTATCCTCCTGCAAAAACGAAAAAGTTACAATGCACCCCGACGTCAGCGCCTCAAATCCGACAAAAGCTTCCTATTTTGAACGTATTAAGCAGTAAGGTAAAAAAAGGAAGCGCTAGCGTTAGCAAACTTGTAGTTTCAAGACTAATTGTTAAGCATCTGCATAACGTAAGACAAATTCTATTTTGCACTAACGCCACACCAATCAAAATATTTGATGGCATCGGATACTGCTGCGGTTACTGCAACGATAAGTACCCCTCGCCAGCTTTACTCAAGCAGCATTGTTTTCAAGAGCACGACGACACAGCAAAAAAACATTTCATGAAAAGCGCTTGTATAACCGATTACCTTAGCAAACTGGATATCACTGACTTCAAATGCCTCCTCTGCGACGACAGTTTGGAAAACTTAGAGAGTGCCATCGAGCATTTGAAAAGTGCTCACGATAAGGAGTTTTACGATGATATAGACAATCATATACTTGCGTTCAAGTTCGATTCAGAGGGTATCAAATGCTCCGTTTGCTCGAAGGTAAACGTTAGTTTCAAAATATCTTTGGAACATATGAGAGTCCATTACCCAAACTATGTGTGCGATAAATGTAACGTACCTTTCATCAATAGACACAATCTTCAATGCCATATTAGGAGGCACAAGCAAGGGGATTTCCCGTGCCAATATTGCGAAAAGATTTTTGGTACGCTCACTAAAAGGAAGAACCATGAAAATTTTACTCACAAAGGCACTCTGTACAAAAGAAACAAGTGCTCGCATTGTGGTGAGAAATTCGATAGTTACCATAAGAAAATTGAACACGAAGTGATGTTCCATGGTAGAGAGCCTTTACAGCTGAAGTGTATGGCGTGCGATCTCGTTTTTCATACAAGGATTGGTCTGACGACGCATATGAGAAGGGACCATCTAATGGAGAGGTCTTATGCGTGCGAAATGTGTGACAAAAGTTTCTTTTCATCGAAATACTTGAAGAGGCACATGCTGTCACATACGGGACTAAAGGAGTTTCAATGCGACGTCTGTTTGAAGGCTTACGTCAGGAAAACTACTTTGAGAGAGCATATGAGAATACATGAAGATGATAGAAGATTCAAATGCGCATTTTGTGACCAAACTTTTGTCCAGAAATGCAGCTTGAAGAGCCATTTGCGTAACCGGTGTGGTACAACTAGTATAGATGACGTAGATGTAAGTACATTACTACTTAACAAGTGCCTCAAAACTAAGCCTGCAGTGGAAAAGAACAACTGGTCTGTCAGTATCAAGGGTTCTCATATACAACGTAAGGGTGTTGGGTCATCGATTGATGCGAAACCGAAAATATTCTTGAGAGGTGTAACCACGAAAGTTCTCCCTCCTCCCAAAACGATAGTGCTCCCTCCTGCAAAAACGAAAAAGTTACAATACACCCCGAATTCAGCGCCTCCAATCCGACTAAAGCTTCCTATTTTCAGCGCATTTAACAGTTCGTTGAAAAAAGGAAGCGCTAGCGATAGCAAACTCGTATTTTCAAGACTAATTGATAAGCATCTGCATAACGTAAGACAGATTCTATTTTGCACTAACGCCACACCAGTCAAAACATTTGATGGCATCGGATACTGCTGCGGTTATTGTGACTATAAGTACCCCACACCAGCTTTACTCAAGCAGCACTGTTTTCAAGAGCACGACGACACagcaaaaaaacattttatgaaACGCGTATCTCTAACCGAGTACTCGAGCAAACTCGATATCACTGACTTCAAATGCCTCCTCTGCGACAACAGTTTGGAAAACTTAGAGAGTGCCATCGAGCATTTGAAAAGCGCTCACGATAAGGAGTTTTACGATAATATAGACAATCATATACTTGCGTTCAGGTTCGATTCAGACGGTATCAAATGCTCCGTTTGCTCGAAGGTAAACGTCAGTTTCAAAATATCTTTAGAACATATGAGAGTCCATTACCCAAACTATCTGTGCGATATATGTAACGTACCTTTCATCAATAGACGCACTCTTCAATGCCATATTAGGGGGCACAAGCATGGGGATTTCCCTTGCCACTATTGCGAGAAGATTTTTGGTACGCTCACTAAAAGGAATgaccatgaaaaatttacccaCAAAAGCAATTTGTACAAAAGAAACAAGTGCTCGCATTGTGGTGAGAAATTCGATAGTTACCAGAAGAAAATTGAACACGAAGTGATGTTGCATGGTAGAGAGCCGTTACAGCTGAAGTGTACGGCGTGCGATCTCGTTTTTCATACGAGGAAAAAACTGACGAAGCATACGAAAAGGGACCATCTAATGGAGAGGTCTCATGCGTGCGCATTGTGTGACAAGAGATTTTTTTCATCGACATGCTTAAAGATGCACATGCTGACACATACGAAAATAAAGGAGTTTCAATGCGACGTCTGCCTGAAGGCTTACGGCAGGAAAACTACTTTAAGAGAGCATATGAGAATACATGAAGATGATAGAAGATTCAAATGCGCATTTTGTGACCAGACTTTTGTTCAGAAATGCAGTTTGAAAAGCCATTTGCGTTCTAAACATAACGAAATTCTGAACTATTAG
Protein Sequence: MMMMMMEDVQLTPTKAYYNNNGNRCGTTSIDDVDVSTLLLNKFLKTKPAVEKNDGSVNIKGAPIQSKGVGSSIDTIPKIILRGVTTKVLPLPKTKVYPPAKTKKLQCTPTSAPQIRQKLPILNVLSSKVKKGSASVSKLVVSRLIVKHLHNVRQILFCTNATPIKIFDGIGYCCGYCNDKYPSPALLKQHCFQEHDDTAKKHFMKSACITDYLSKLDITDFKCLLCDDSLENLESAIEHLKSAHDKEFYDDIDNHILAFKFDSEGIKCSVCSKVNVSFKISLEHMRVHYPNYVCDKCNVPFINRHNLQCHIRRHKQGDFPCQYCEKIFGTLTKRKNHENFTHKGTLYKRNKCSHCGEKFDSYHKKIEHEVMFHGREPLQLKCMACDLVFHTRIGLTTHMRRDHLMERSYACEMCDKSFFSSKYLKRHMLSHTGLKEFQCDVCLKAYVRKTTLREHMRIHEDDRRFKCAFCDQTFVQKCSLKSHLRNRCGTTSIDDVDVSTLLLNKCLKTKPAVEKNNWSVSIKGSHIQRKGVGSSIDAKPKIFLRGVTTKVLPPPKTIVLPPAKTKKLQYTPNSAPPIRLKLPIFSAFNSSLKKGSASDSKLVFSRLIDKHLHNVRQILFCTNATPVKTFDGIGYCCGYCDYKYPTPALLKQHCFQEHDDTAKKHFMKRVSLTEYSSKLDITDFKCLLCDNSLENLESAIEHLKSAHDKEFYDNIDNHILAFRFDSDGIKCSVCSKVNVSFKISLEHMRVHYPNYLCDICNVPFINRRTLQCHIRGHKHGDFPCHYCEKIFGTLTKRNDHEKFTHKSNLYKRNKCSHCGEKFDSYQKKIEHEVMLHGREPLQLKCTACDLVFHTRKKLTKHTKRDHLMERSHACALCDKRFFSSTCLKMHMLTHTKIKEFQCDVCLKAYGRKTTLREHMRIHEDDRRFKCAFCDQTFVQKCSLKSHLRSKHNEILNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -