Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453324.1:4891479-4913188[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.28 48 6.5 1.2 1 23 376 398 376 398 0.97

2 10 5.8e-05 0.0098 18.1 7.1 1 23 454 477 454 477 0.96

3 10 0.0025 0.41 12.9 0.3 1 23 482 505 482 505 0.93

4 10 4.5e-05 0.0076 18.4 3.1 1 23 511 533 511 533 0.98

5 10 4.5e-05 0.0076 18.4 3.1 1 23 621 643 621 643 0.98

6 10 1.9e-05 0.0032 19.6 0.3 1 23 648 670 648 670 0.96

7 10 1.3e-05 0.0023 20.1 1.5 1 23 679 701 679 701 0.99

8 10 4.9e-06 0.00082 21.5 0.8 1 23 707 730 707 730 0.98

9 10 1.4 2.3e+02 4.3 2.3 1 12 737 748 737 750 0.93

10 10 0.27 46 6.5 5.8 1 23 768 791 768 791 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.28	48	6.5	1.2	1	23	376	398	376	398	0.97
2	10	5.8e-05	0.0098	18.1	7.1	1	23	454	477	454	477	0.96
3	10	0.0025	0.41	12.9	0.3	1	23	482	505	482	505	0.93
4	10	4.5e-05	0.0076	18.4	3.1	1	23	511	533	511	533	0.98
5	10	4.5e-05	0.0076	18.4	3.1	1	23	621	643	621	643	0.98
6	10	1.9e-05	0.0032	19.6	0.3	1	23	648	670	648	670	0.96
7	10	1.3e-05	0.0023	20.1	1.5	1	23	679	701	679	701	0.99
8	10	4.9e-06	0.00082	21.5	0.8	1	23	707	730	707	730	0.98
9	10	1.4	2.3e+02	4.3	2.3	1	12	737	748	737	750	0.93
10	10	0.27	46	6.5	5.8	1	23	768	791	768	791	0.96

Sequence Information

Coding Sequence: ATGTTACACAACACAGGCCTTTACGGGCCAAATGAGACTCCGGTGAACATGGGTGCGCCTAAGATACCAGAGCTTGCTTCACCTATGGATATTGCTCCTAACTTCGATCATTTCATGAAAATGTCGCAGCAGACCCCTAATCCGCCTCCAGGGCACTTTAATCTGCAGAACTATGTTGGTTACGCCGGCACATCAGGAAGTAGTACCCCACAAATGGGTATGTTCCGAAATTACAATTATTCTGACAATCACGGTAAGTCGTTCGTCACACAAACTCAAGAAACTAATTTGGCGAATCATTTTTTGCACCCGATGCTACACAACGGCAATATCCTAGAAGACATTCTTCGTAACAACGACGACAGTCAAAAAGCGGTAAATTTCTCAAACATAGCTAACAATTTGGCCAACAATTTTAAGGCAAGAGATAGACCTCAGGTTGACAACCCAACTATGAGCATAGTGGAAATGTCTCATTTTTTAAACCAAACAAATACTCAAAGGTATTTTGATAACAATACTAATAAGCAAAGTGAAGAAGACATATCTGAGAAAACGTTAGATGTAGAtcctaatgtaaataaaaatgacaATGTTATTACTTCACAAATAAATGCTACAGAATGCACTTCagataatgaatcttccaataGCTCCAACAAATCAACAAGAGACAATGTCGAAAACAATGGAAAAGTATTATTAAGCTACCTCAAAAACACAGAACCTAACCAAAACGTGTACAAACAAGACAACAGTGATGATGAGAGTATTAATGAAATGGACAACGAAGATACCTTCAGAAAAGTAATTTCTAGAACAAATTACTGTAAAAAACAGGATGAAGATTCTGAGTCGGACGATGAGAAACCGTTAAATCTCGTACATTTTATAAAACAGGAACCAATAGACCACACAGATACAGTTGACCAAATAAACGAGAGTGTGGTCGTGAAAATTGAACCAATCTCAACATGGACCGACACGGAACACATGCAACCGTTTATGAAAGACATTAATGGCGTCTCAAGAGAAGATTCTAGTCTTACTAACATAATGGATTCTGTACATAGTGTCGCTGAAGCTACAGAAATTGTTCAAAATGATGAGGAAACAGACTTGAGTTTTGAATGCCCAAGTTGCTATCTTCTTTTTAGTCATCCCAAAAGATTCCTCATACACGTAAAATGGCATTCATTTGGACTTATTAACGAGAAAAGGATTGAAGAAGCCAATGAAAAATTAGCTTGCCGTAAGCAGAGGAAAGAGATCAAGAAAGAAGAAGATATGGTAAAAAAGGAAGCGGCGGCAAAACTCAAAGCAGAAGAGGCAGCAGCACTGAAACCGTCTCAAGAGGTGTTCAACTGCAAGGACTGCGACAAAAAATTCAATACCAAAAGCAAACTGAGGAACCACAGGCACAAATACCACCCAAGCCGCGAGCACGAATGCAAGATATGCAACAAGAAGGTCATGGGTTGGTACGGTCTGCAAACGCACATGGCAGCCAATCACAACAAAATTGACGCTTTCGTGTGCGACGTCTGCCAGAAGGGATTCAAACACGCACATTCTTTGGCCAAACACAGGGACACACACAGGCTTTATCTCGCTCTCTGTATATTTCTGTCCCTTTCTATCTCTCCCTCCGTCTCTCACTCCATCATCAACATCAGCCATTTTGAATCCAACGTCTACAAGAAGGTCATGGGTTGCTTTATCTCGCTCTCTCAAGCTTTATCTTGCTCTCTATATTTCTGTCCCTTTCTATCTCTCGCTCCCTCTCTCTCCATCATCGATTTCGTATGCAATGTCTACAAGAAGGTCATAAACGCACCCAATCACAACAAAACCGACGCTTTCGTGTGTGACGTCTGCCAGAAGGGGTTCAAACACGCACATTCGTTGGCCAAACACAGGGACACACACAGGGAAAAGACCCACGCATGTGCGGAATGCCCGAAGATGTTCGGCTCTGCGACCCTTCTCAAGATCCACATGCGATCCCACGAACGAGCTCAGCGCGGACGCACCTTTAGGTGCTCCTACTGCGGAAAGGGCTTCTACGAGGCGTATACATTACAGTACCACGAGCGCACGCACCGAAACGAGCGTCCGTTCAAATGCGAGATCTGCGAGACCAGCTACGGAACCAACTCGAGTCTGAAACGCCATCTTAAAGTGTCCCACTTAAACAACGCGAAACCGTTCGAATGCGACACCTGCCGTCGTTGCTTCAGCACCGAACTGATTCGAGACCGGCACGCGGCGCGCTACCACGGTGCGCCAACAGCACTGACCTACGCCTGCACGGAATGCACTTGCAGGTACTTAAGGCACAAAGATCTGAAAAGGCACATGTATAGAATACATCCCAAAGGTAGGAATCGAAGAAAAGAGAGCGATAGTGAATAG
Protein Sequence: MLHNTGLYGPNETPVNMGAPKIPELASPMDIAPNFDHFMKMSQQTPNPPPGHFNLQNYVGYAGTSGSSTPQMGMFRNYNYSDNHGKSFVTQTQETNLANHFLHPMLHNGNILEDILRNNDDSQKAVNFSNIANNLANNFKARDRPQVDNPTMSIVEMSHFLNQTNTQRYFDNNTNKQSEEDISEKTLDVDPNVNKNDNVITSQINATECTSDNESSNSSNKSTRDNVENNGKVLLSYLKNTEPNQNVYKQDNSDDESINEMDNEDTFRKVISRTNYCKKQDEDSESDDEKPLNLVHFIKQEPIDHTDTVDQINESVVVKIEPISTWTDTEHMQPFMKDINGVSREDSSLTNIMDSVHSVAEATEIVQNDEETDLSFECPSCYLLFSHPKRFLIHVKWHSFGLINEKRIEEANEKLACRKQRKEIKKEEDMVKKEAAAKLKAEEAAALKPSQEVFNCKDCDKKFNTKSKLRNHRHKYHPSREHECKICNKKVMGWYGLQTHMAANHNKIDAFVCDVCQKGFKHAHSLAKHRDTHRLYLALCIFLSLSISPSVSHSIINISHFESNVYKKVMGCFISLSQALSCSLYFCPFLSLAPSLSIIDFVCNVYKKVINAPNHNKTDAFVCDVCQKGFKHAHSLAKHRDTHREKTHACAECPKMFGSATLLKIHMRSHERAQRGRTFRCSYCGKGFYEAYTLQYHERTHRNERPFKCEICETSYGTNSSLKRHLKVSHLNNAKPFECDTCRRCFSTELIRDRHAARYHGAPTALTYACTECTCRYLRHKDLKRHMYRIHPKGRNRRKESDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -