Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453303.1:5692415-5713006[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.1 8.5e+02 2.5 0.1 3 23 113 133 111 133 0.93

2 18 0.042 7.1 9.1 0.2 2 23 137 159 136 159 0.92

3 18 4.7 7.9e+02 2.6 0.3 3 23 401 422 399 422 0.94

4 18 0.18 31 7.1 0.1 1 19 430 448 430 450 0.96

5 18 0.023 3.9 9.9 0.8 3 23 462 482 461 482 0.97

6 18 1.2 2e+02 4.5 2.2 1 23 498 521 498 525 0.94

7 18 0.0064 1.1 11.6 0.6 1 23 530 553 530 553 0.94

8 18 1.5 2.5e+02 4.2 0.7 3 23 632 653 630 653 0.87

9 18 1.8 3e+02 3.9 1.2 1 23 658 681 658 681 0.94

10 18 9e-05 0.015 17.5 4.0 1 23 687 709 687 709 0.97

11 18 6.7e-06 0.0011 21.0 1.8 1 23 716 738 716 738 0.98

12 18 1.9e-05 0.0032 19.6 2.9 1 23 743 765 743 765 0.96

13 18 0.0016 0.27 13.5 2.4 3 23 773 793 771 793 0.98

14 18 1.8e-06 0.0003 22.8 2.2 1 23 799 821 799 821 0.98

15 18 0.00045 0.075 15.3 3.5 2 23 828 849 828 849 0.98

16 18 0.00044 0.075 15.3 0.2 2 23 857 879 856 879 0.96

17 18 0.00022 0.037 16.3 0.5 1 23 884 906 884 906 0.98

18 18 3.7e-05 0.0063 18.7 2.1 1 23 912 935 912 935 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.1	8.5e+02	2.5	0.1	3	23	113	133	111	133	0.93
2	18	0.042	7.1	9.1	0.2	2	23	137	159	136	159	0.92
3	18	4.7	7.9e+02	2.6	0.3	3	23	401	422	399	422	0.94
4	18	0.18	31	7.1	0.1	1	19	430	448	430	450	0.96
5	18	0.023	3.9	9.9	0.8	3	23	462	482	461	482	0.97
6	18	1.2	2e+02	4.5	2.2	1	23	498	521	498	525	0.94
7	18	0.0064	1.1	11.6	0.6	1	23	530	553	530	553	0.94
8	18	1.5	2.5e+02	4.2	0.7	3	23	632	653	630	653	0.87
9	18	1.8	3e+02	3.9	1.2	1	23	658	681	658	681	0.94
10	18	9e-05	0.015	17.5	4.0	1	23	687	709	687	709	0.97
11	18	6.7e-06	0.0011	21.0	1.8	1	23	716	738	716	738	0.98
12	18	1.9e-05	0.0032	19.6	2.9	1	23	743	765	743	765	0.96
13	18	0.0016	0.27	13.5	2.4	3	23	773	793	771	793	0.98
14	18	1.8e-06	0.0003	22.8	2.2	1	23	799	821	799	821	0.98
15	18	0.00045	0.075	15.3	3.5	2	23	828	849	828	849	0.98
16	18	0.00044	0.075	15.3	0.2	2	23	857	879	856	879	0.96
17	18	0.00022	0.037	16.3	0.5	1	23	884	906	884	906	0.98
18	18	3.7e-05	0.0063	18.7	2.1	1	23	912	935	912	935	0.98

Sequence Information

Coding Sequence: ATGACTTCTGATGATTCGGACGATGAACCGCTGTCCATAATAGCCGCCACGAAAAGGTTGGATCCAGTGAATTTCGAGATAAAAAAAGTGAAACCCAGCGATGGTGTTACAAAAAGGAAGAAAAAAAAGCCGATTGATACAAAAAAGCTGTCCCTGACCATTAAAATTGGGCAAAATGACACAGAAAACAAAGTGTTGAACCGGCCGACCGATGTTTGGTTGTACATGAAAGACTTGAATCCTGCTGGCCCTTACAGTTGCTTGTTATGTTCGGGTTGGTTCATCAACAGGACCAAAATGATAGTTCACTACATGACAAACCACCAAAAAGACTTCTGTGGCATATGCAGATATTTTGTGGCAGACCGAGAAGCATGGGCAAACCATTTGACCTTCCATACACCTTGGTCATGTTCTCAATGTACAGAATTCTATCCAACCGAGTCAGAAATGAGGCAGCACTTGAGCGAAGCACACAATCTTGTACACTGTCGACTATGCCACTTCAGGGTGTCCGATGGCGAGCAATATGACGCTCACCTCCTTCAGAAACATAATGTCACTAATTTATCCAGTAAAATGGAAGATGTACTTTGGAACCATGAGTATGATGGTAGCTTCAAGTTTTTTTGCTTATTGTGTTCGAAACCTAATAATTTATCgattaatttctttaatcaCTATATGGGATACCATCGTTTTACATTGAAATGCTTCTCCAACTTTATTGCTGGACGGGACGTTCCATTCTCTGTGGAAGGGGCAGATGTAAGCTCTCAATTTGTTGATGGAGAACTCAATATGCTAAAATTCGGATATGTAGACTTAGAAAAGAAGAATCAAGAAAGTCTTGAAACTGATAGCATTGACAGCACTAACATTAATGCTGTAATACCGGAAATCAAACATGAGGTTTTAAGTGACAATGATGACACACCAGAAACAACTGACAGCTCTAAAGTTGAAGAGAAAGAGCTGGATCCTGAATCAGAGCAAAAGAATAGTGAGAAAAATGATTTCTTAGACTCGTATCAAGGAGATAATGACTTCGACATAACATCTATGGAGCTAATTGTATTACAAAAGTGTTACTTtgactatataaataaaattataaatcttatcAATGCCAAAGTTGTACCCGAAGAGTCTTCAGTAGATTACACAGAATCAAAGGCTAATATTGCTATGAGAATTTTTTGTACTCTTTGCAAGAGTAATATTGATACATTACAAGACTATGCAGTGCATATGAAAAAGGTGCATGCGGTGAAGACTGAACCAATATACACTTGCAGAGTGTGTGCAACTACATTTAACAGTTTGCTAGAGCTGGAGAACCATGCCTATGAAGAATTAAAGGAGTTTGATGATTTATGGTTATGTCAGTTTTGTGAGAAAGAGTTTGATAATCGAGAAGCAACAAGAAGACATCTCAATGAGCACTGGGATATTCTGGAGTATGACAATTGCTTCAGCCCTCATCTAGGCTTTAAGTGTCAATATTGCCCAACATTGTTTTGGAATGAACCTGATAGAAAAAGACACCAACTCAGAGTTCATTTCAATAGACATAAAGAGGATTGCTACAAATGTGAAGGTTGCGCTGAAATATTCAGTGATAAGGTATGGTTCGTTCACCACTATTTGGAAAAACATCAAAGCGAACGGGACAACACGGCCTACCTTTTCAAATGCTGCCTGTGTTGCGTAGTCTTGCCCACGGTGGAAGACATGAGGTGCCACTTTGCTGATCATCATCCCGAGGCTAGGAAAGTGTTCTGCTCATTGGGAGCATGTCGCTACAGGCCACTTTGTCATAAGAAGTCTTTTAGGATGCATGTAAAGTCTGTGCACAGCACCGAAGCAATGCAACAAGAACGCTCAAGCACTTGCATAATATGCGGTAAGGACTTCGCCACGGCCCGCGCCTGCAGCACGCACATGACGCAGGTGCACGGCCCCGGCAAGTTCAAGTGCAAGCTGTGCCGGGAGGTGATGTACACGAGCGATGAGAGGAAACTTCACTACCTCATCCGCCACCCTGGCCGCCACCCGTTCTCCTGCACGGAGTGCGGTAAATCCTTCCAGCACAAGTCTTCGTTGTATATGCACAAGCAGGAACACAGGCCCAACCAGCAGAGCTACACTTGCGACTACTGTCAGAAGGTTTTCACGAAAAAGGACTCATTCCGCGAGCATGTCCAAATCCACGAAGGCCCCCGTCACGCGTGCTCGTACTGCCCGAAGCGATTCGTGCAGCGCTCCAACATGTTGCGCCACGAGCGGAGACATACCGGCGAGCGGCCGTACGGGTGTCCGCACTGCCCTAGAACATTCTCTGACAAGGGCGCCTGTACTTCGCATGCGAGAACTCATACAAAGGACAGATCCTATTCCTGCCTCTACTGCGGCCAAACGTTCGTTCAGAAATCGAAATTGACATACCACATTAGAAAACATACTGGAGAGAACTTAGAGACGTGTACCGTGTGCTCTAAGTTGTTCACCAGCGCCTGCTCTCTACGGGAGCATATGAAAACGCACGTGGTGAAAAAGGATGCGGTCCCTTGTCCACTCTGCGGCCGCAAGTACCAAGACGAGCGTTACATGATGCGCCACTTACGCACTGTGCACGCGGGCACCCGCTACAGCTGTCCACTGTGCCGTAAGACGCTGACTTCTGCAGCGGGGCTAAGGCACCATGTGATCACTCATAGCGACGTCAATATGTTTCGGTGCAAGCTCTGTCCGAAATCCTACGCTGTGAAACGCACTTTAATGAAACACTTGCGTAGACGCCACTACTTGAAAGGAGTAGACGCAGTATTAAAAGATTTCTTCCAAATCTTAGACCCTCGGGAATGCAACTTGGGTCTCGAAGACGAAATTATGAATACCATATTTGGACCCCCAAAACGACAAAGAAATGACATCTTACTATCAGACTTTGTGACTTTAAAGAAACTGGCTGAGGAAGCCAAGAACAAAGCGGGACAAGGACAAAGTCAGGAAGGTGATGGCGAAGGTGAAGATACTGAAGGTGGTGATACCAAAGATGAAGAGACTGATGAAGAGAAATGTGAGGAATCAATAGAGCATATTTCTATGGAGCTCGAACCTACTGATTTTGTTAGCGTTAAGATTGAACCTATGGATGAGACTGATGATGAGGTTGAGTGA
Protein Sequence: MTSDDSDDEPLSIIAATKRLDPVNFEIKKVKPSDGVTKRKKKKPIDTKKLSLTIKIGQNDTENKVLNRPTDVWLYMKDLNPAGPYSCLLCSGWFINRTKMIVHYMTNHQKDFCGICRYFVADREAWANHLTFHTPWSCSQCTEFYPTESEMRQHLSEAHNLVHCRLCHFRVSDGEQYDAHLLQKHNVTNLSSKMEDVLWNHEYDGSFKFFCLLCSKPNNLSINFFNHYMGYHRFTLKCFSNFIAGRDVPFSVEGADVSSQFVDGELNMLKFGYVDLEKKNQESLETDSIDSTNINAVIPEIKHEVLSDNDDTPETTDSSKVEEKELDPESEQKNSEKNDFLDSYQGDNDFDITSMELIVLQKCYFDYINKIINLINAKVVPEESSVDYTESKANIAMRIFCTLCKSNIDTLQDYAVHMKKVHAVKTEPIYTCRVCATTFNSLLELENHAYEELKEFDDLWLCQFCEKEFDNREATRRHLNEHWDILEYDNCFSPHLGFKCQYCPTLFWNEPDRKRHQLRVHFNRHKEDCYKCEGCAEIFSDKVWFVHHYLEKHQSERDNTAYLFKCCLCCVVLPTVEDMRCHFADHHPEARKVFCSLGACRYRPLCHKKSFRMHVKSVHSTEAMQQERSSTCIICGKDFATARACSTHMTQVHGPGKFKCKLCREVMYTSDERKLHYLIRHPGRHPFSCTECGKSFQHKSSLYMHKQEHRPNQQSYTCDYCQKVFTKKDSFREHVQIHEGPRHACSYCPKRFVQRSNMLRHERRHTGERPYGCPHCPRTFSDKGACTSHARTHTKDRSYSCLYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKLFTSACSLREHMKTHVVKKDAVPCPLCGRKYQDERYMMRHLRTVHAGTRYSCPLCRKTLTSAAGLRHHVITHSDVNMFRCKLCPKSYAVKRTLMKHLRRRHYLKGVDAVLKDFFQILDPRECNLGLEDEIMNTIFGPPKRQRNDILLSDFVTLKKLAEEAKNKAGQGQSQEGDGEGEDTEGGDTKDEETDEEKCEESIEHISMELEPTDFVSVKIEPMDETDDEVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00284775; iTF_00035112; iTF_00035958;
90% Identity: -
80% Identity: -