Clat050098.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453319.1:13079548-13099146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.32 13.3 5.2 1 23 35 58 35 58 0.96 2 13 0.0072 1.2 11.5 0.3 1 23 64 87 64 87 0.96 3 13 0.0019 0.32 13.3 5.2 1 23 117 140 117 140 0.96 4 13 0.0022 0.37 13.1 0.2 1 23 146 169 146 169 0.96 5 13 0.014 2.3 10.6 5.9 1 23 199 222 199 222 0.95 6 13 0.0034 0.57 12.5 0.1 2 23 229 251 228 251 0.94 7 13 0.001 0.17 14.1 0.5 1 23 257 280 257 280 0.98 8 13 0.0025 0.43 12.9 4.1 1 23 305 328 305 328 0.96 9 13 0.0023 0.38 13.0 0.5 1 23 334 357 334 357 0.96 10 13 0.00022 0.037 16.2 0.6 1 23 363 386 363 386 0.98 11 13 0.00052 0.087 15.1 3.7 1 23 413 436 413 436 0.96 12 13 0.00038 0.064 15.5 0.7 1 23 442 465 442 465 0.96 13 13 0.0049 0.83 12.0 0.3 1 21 471 491 471 492 0.95
Sequence Information
- Coding Sequence
- ATGCAAGATCGAAGAGGAGAAAAACCAAAACAgaaatGCGATAGCCACTCCGCGCCCAAGTTCAGACTACGCGATGGTGACTATACCGCTGAAGGTGATGTATACAAGTGCAACAAATGCTACAAGATGTTTACCTCAATGAATACGCTGCGATACCACGTGAAGCATTGGCATTACAATATCCCTAGATTCTATTGCCAATACTGTAAAGAAGGCTTCATGACAAAACCCCCTTTAGCAGCCCATAAATTGAAAGAGCATAGAGTGGACGACCGCTACAAATGCGATAGCCACTCCGCGCCCAAGTTCAGACTACGCGATGGTGACTATACCGCTGAAGGTGATGTATACAAGTGCAACAAATGCTACAAGATGTTTACCTCAATGAATACGCTGCGATACCACGTGAAGCATTGGCATTACAATATCCCTAGATTCTATTGCCCTTACTGTAAAGAAGGCTTCATGACAAAACCCCCTTTAGCAGCCCATAAATTGAAAGAGCATAAAGTGGACGACCGCTACAAATGCGATAGCCACTCCGTGCCTAAGTTCAGACTACGCGAGGGCGACTATACCGAAGAAGGTGATGTATACAAGTGCAACAAATGCCACAAGACGTTTACCGCAATGGAGCGTCTGCGATACCACGTGAAGCATATACATTACAAAATCCCTAGATTGTATTGCCCTTACTGCAAAGAAGGCTTCATGACAAAAGCCCCTTTAGCAGCCCATAAATTGAAAGAGCATAAAGTGGACGATCGCTACAAATGTAACGCTTGTAACGCCGCATTTAACATGAGAATACAACTCCGAAGTCATATAAACAGTTTCCATATGCTCGGCGATAGCCACTCCGCGCCTAAGTTCAGACTACGCGAGGGCGACTATTTCGCTGAAGATGATGTATACAAGTGCAACAAATGCTACAAGATGTTTGCCTCAATGAATACGCTGCGATACCACGTGAAGCATTGGCATTACAACATCCCTAGATTCTATTGCCAATACTGTAAAGAAGGCTTCATGACAAAACCCCTTTTAGCAGTCCATAAATTGAAAGAGCATAAAGTGGACGATCGCTACAAATGCAATGCCTGTAACGCCGCCTTTAACTTTAATATAGACCTTCGAAATCATATGAACAGTTACCATATGCTTGGCGCTAGCCACGCCGCGCCTAAGTCCAGATTCAGACTACGCGATGGCGACTATACCACTGAAGGTGATGTATACAAGTGCAGCAAATGCCACAAGGATTATGACAAAAAGGACTCGCTGCGAGACCACGTGAAGGCTAAGCATTACAACATCCCTAGATTCTACTGCCCTTACTGCAAGAAAGGCTTCATGACAAAAGCACCTTTAGCAGTccataaattaaaaaagcataACGTAGACGATCGTTTCAAATGTAACGCGTGTAATGGCGCATTCAACTTTAAAATACAACTCCAGAAGCATATAAACAGTTGCCCTATGCTCGGTGCTAATATAAGAGCTAATTTTGTGAATACGAAAACTTTTGCTTAA
- Protein Sequence
- MQDRRGEKPKQKCDSHSAPKFRLRDGDYTAEGDVYKCNKCYKMFTSMNTLRYHVKHWHYNIPRFYCQYCKEGFMTKPPLAAHKLKEHRVDDRYKCDSHSAPKFRLRDGDYTAEGDVYKCNKCYKMFTSMNTLRYHVKHWHYNIPRFYCPYCKEGFMTKPPLAAHKLKEHKVDDRYKCDSHSVPKFRLREGDYTEEGDVYKCNKCHKTFTAMERLRYHVKHIHYKIPRLYCPYCKEGFMTKAPLAAHKLKEHKVDDRYKCNACNAAFNMRIQLRSHINSFHMLGDSHSAPKFRLREGDYFAEDDVYKCNKCYKMFASMNTLRYHVKHWHYNIPRFYCQYCKEGFMTKPLLAVHKLKEHKVDDRYKCNACNAAFNFNIDLRNHMNSYHMLGASHAAPKSRFRLRDGDYTTEGDVYKCSKCHKDYDKKDSLRDHVKAKHYNIPRFYCPYCKKGFMTKAPLAVHKLKKHNVDDRFKCNACNGAFNFKIQLQKHINSCPMLGANIRANFVNTKTFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -