Clat007936.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453298.1:19708245-19727877[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.027 4.6 9.7 1.3 2 19 213 230 212 235 0.91 2 12 0.77 1.3e+02 5.1 0.2 5 23 244 262 242 262 0.93 3 12 9.7e-06 0.0016 20.5 1.3 1 23 295 318 295 318 0.96 4 12 0.14 23 7.5 0.2 5 23 327 345 326 345 0.95 5 12 0.077 13 8.2 2.1 2 23 352 373 351 373 0.96 6 12 9.7e-06 0.0016 20.5 0.7 1 23 381 403 381 403 0.97 7 12 0.0005 0.085 15.1 1.2 1 23 412 435 412 435 0.97 8 12 0.00027 0.046 16.0 0.2 1 23 441 463 441 463 0.97 9 12 1.4e-06 0.00024 23.1 4.2 1 23 469 491 469 491 0.98 10 12 0.00037 0.063 15.5 1.1 1 23 496 518 496 518 0.98 11 12 0.00028 0.047 15.9 6.4 1 23 524 546 524 546 0.97 12 12 0.00028 0.047 15.9 2.1 2 23 553 575 552 575 0.95
Sequence Information
- Coding Sequence
- ATGGCTTTAGATATCAAAGAATTATGCAGATTATGTGCAAAAAAAGAAGATTTTACAAAAGATTTATTCGATGCTAACAACAAAAGTGCATTAAAACTTATTAAGGATCTTGTTCAAATAGTCATCAATGAAAATGATGAACTTCCCActaaaatttgtttgaattgtgAAGAGAAAATGGTTTCATTTCAGTTATTTATTCTAGAATGCTACAAAGCGCAGgacaatttaaataatttgtatttaGAATATAATAAGGGTTTAAAGGTAAAGCATGAAAATCATACTGGTTATATTAAGTCTGAGGTAAAAGAAGAACTTTCAGCTGATGATCTTGTTTTAAGTGCAATAAATAATGATGACAATCTTAATATTAATCATGACGATTTTAATGATTACTCAAGTGATGTAGTTGGAGATGTTGATAGTGAaattaatgatgatgatgatgatgatgatgactacttGGATAATGTCACACTGGCAGCACTTAAAGAAGATAAACTCAATGATGAGCTACCaaataaaacagaaaagaaACGCTAcaagaagaaaaataaaacttatgaaCAGACCGAAGCAATTGAGAAGGTCCTTCAGAAGGCTGATTTGAGAGTAAAAGATTTAGTAAAattgaAATGTGAGATTTGTGACCAGAAAGTGAAATCATGGAGTGGATTGAGTATACATTGCTATAAATCACATAGAAGTAAAGCTTCAGTAAGCTGCATATGTGGCTATGTCATTAAGTCTAAGAGTGTCCTTTACAAGCATGTGTCTGACCATAAGATAGCAAATCGGAAGTCCAAGAATAGTGAAAATGAATCAAAAGATGAAGTAGACTCCAAGTATTCCAGCCTTAAAATTAACGATTTTGTCTCaTTTACATGCACTGTCTGTCAAAAGAAATATTCAAGTTGGTACAGTCTGAAGGCCCACACTGAATCTATGCACAAGGTGCCACCGGTAGTCCAATGTGTTTGTGGTATAACTCTTAAATCAAAATCGGTACTTTACAAACACATTCAAGATCACAAAAATCCTAATATGCTATGCTGTGATAAGTGTCCCAGAATAACGAAAACAGTTGAAGCAATGAACAAACATAAGATGAGGCACATACCGAAATCTGAGAGACAATTCATATGTCGTACTTGTGACAAAATCTTTGTTACAAAAGATGCACTGAAATCTCATGAACGATCACACATTCCAATCGAGGAGCGTAAGATATACCACTGCGACGTTTGTGACTTGAAATTCACGACTAGATCGTCGGCGGCGTCTCACAAGAGGGTGGTGCACGATAAGATCAAGAGTTACGTGTGCGATCTATGCGGGTACGCGTGCGGCACCAACGGCGAGCTGCGGCAGCACCGCGCCATACATAGCGACGACAAGCCGTTCGTCTGCAAGACTTGCTCCAAACCATTCAAGACCCATTCGAACCTCAAGACCCACATGGACACCCACGAGGACACCTCGTACCAGTGCTACGTGTGCAGTCGCGTGCTGAACAGCCGCCGCACGCTGCGCAAGCATCTACTGGTTCACGAGGAGAAATGCCGCCATGTCTGCTCATTCTGCCACAAGGCTTTCAAGCGGCGGCAGACGCTCAAAGTGCACCTGTACACACACACGGGTGACAAGCCGCTTACCTGCAAATGGTGCGACGAGCGCTTCGCGTACGCGTCGACGCTGCGCTCGCACCGGCTGCGCTGCCACCCGGACAAGATGGTGGGGCATGCGCCGGGCCACTCGTACTCATACCACATCCCGGCCGCCATGCCGCTACCAACGTCTGACGTCTCGTCCGAATACATAAAGAATGACAGTGCTGTGAATATTGCGAAAAACGAAGCGGAGGCTATGTAG
- Protein Sequence
- MALDIKELCRLCAKKEDFTKDLFDANNKSALKLIKDLVQIVINENDELPTKICLNCEEKMVSFQLFILECYKAQDNLNNLYLEYNKGLKVKHENHTGYIKSEVKEELSADDLVLSAINNDDNLNINHDDFNDYSSDVVGDVDSEINDDDDDDDDYLDNVTLAALKEDKLNDELPNKTEKKRYKKKNKTYEQTEAIEKVLQKADLRVKDLVKLKCEICDQKVKSWSGLSIHCYKSHRSKASVSCICGYVIKSKSVLYKHVSDHKIANRKSKNSENESKDEVDSKYSSLKINDFVSFTCTVCQKKYSSWYSLKAHTESMHKVPPVVQCVCGITLKSKSVLYKHIQDHKNPNMLCCDKCPRITKTVEAMNKHKMRHIPKSERQFICRTCDKIFVTKDALKSHERSHIPIEERKIYHCDVCDLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCKTCSKPFKTHSNLKTHMDTHEDTSYQCYVCSRVLNSRRTLRKHLLVHEEKCRHVCSFCHKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMVGHAPGHSYSYHIPAAMPLPTSDVSSEYIKNDSAVNIAKNEAEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035962;
- 90% Identity
- -
- 80% Identity
- -