Clat050085.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453319.1:12903733-12918965[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0039 0.66 12.3 0.2 1 23 86 109 86 109 0.96 2 17 0.0031 0.52 12.6 1.6 2 23 135 157 134 157 0.94 3 17 0.13 21 7.6 1.4 5 23 184 202 181 202 0.93 4 17 0.00045 0.075 15.3 0.2 1 23 206 228 206 228 0.97 5 17 0.00014 0.024 16.8 0.9 1 23 235 258 235 258 0.97 6 17 0.0031 0.51 12.6 1.0 2 23 266 288 265 288 0.94 7 17 3.7e-06 0.00063 21.8 0.6 2 23 294 316 293 316 0.96 8 17 1.6 2.6e+02 4.1 1.0 1 23 322 345 322 345 0.89 9 17 4.6e-05 0.0078 18.4 0.8 1 23 351 374 351 374 0.98 10 17 0.91 1.5e+02 4.9 0.1 1 23 594 617 594 617 0.97 11 17 0.00037 0.062 15.5 0.7 1 23 665 687 665 687 0.96 12 17 0.89 1.5e+02 4.9 1.9 1 23 692 715 692 715 0.88 13 17 0.17 29 7.1 0.2 2 23 723 745 722 745 0.87 14 17 0.012 2.1 10.7 0.5 1 23 752 775 752 775 0.97 15 17 0.0012 0.21 13.9 2.8 1 23 781 803 781 803 0.96 16 17 0.00021 0.036 16.3 0.3 1 23 809 832 809 832 0.97 17 17 0.00069 0.12 14.7 5.5 1 23 839 862 839 862 0.97
Sequence Information
- Coding Sequence
- ATGAAGAAACTAGCAAGAAATTATGTAGTTTTAAGAAGAGAATCGCCTGTGAAAGACTGTTTTTCTTTTATAGGTAAACGCGGTAAGAAAAAACGGAAACGGCTAAAAAAAGAGGAAGGTGAGAGTGTAGACAAAGTTGAATATACAGAGAAAGTAGAGAAACATCTCCCTGAATTTCAGAAGCAGTGGCATAATCTGACTACTCTTCTCAAATACTCCAATGCCACGCCATTCAAGGATAGAAATGACGCGGGTTATGTTTGCGCTTACTGCTTCGAAACATTCCCTGATCCTCAAGTGCTAAGAAGCCACACACAGAACGACCACGTCCGAGAGAGGCCGACTTATAAAGCAGGATCAGGCATGGCCAGTTTCGTCGCCTTCCTCGATATTGTCGATCTAAAATGCACTATATGCGAACACCCTTTCGACACCCTAAACCACCTAACAGAACATCTAGTCAAAATCCACGACAAGAAATACTATCTAGGAATAACTGATTACTTTCAACCATTCAAACTGACAAACGAACCCCAAATCAACTGCATTCTCTGCAACGAAGTGTTCCACAACATGAAGTTGTTGATGCAGCACATGAATTTGCACTACAACAACTTTATTTGTCCTACCTGCGGTGCTGGATTCGTCAATAGCTTTAGACTTAATCGTCACGAAACAACACATGTTAAGAAAAAATCAAGTTTCCCTTGCAAGCATTGCGGGCAAGTTTTTTCAGCGGAATCTAAGAGGAAGGCTCATATTAATACCGACCACAAGGGAATCGCTGGCCATAGCGTGTGTCAGATCTGCAAAGCTAGGTTTAAGAACTATTATCAGAAGACGAGGCACATGATACAGATACACAACGCTGAGGGTATCAAATGCGACATGTGTGACAAGAAATTCAATCTCAAATCAAATTTAATGTTGCATATGCGGGGAGTCCATCTTAAAGAGAGGCCTTATGAGTGCTCTGTGTGCAGTATGGGATTCTTTATAAAGCGGCATATGTTAGGCCACTATATGGCGACACATACGAACGAGAGAAAgtataaatgtgatatatgtggcAAAGCTTATGCTACGCAGAACAGCAGAGGTAAACACATGAAGAAGAACCATGGGATCTCCAAAAGTCAGTTGATGGCGCAAAGTAACCGGTGGGGTACAAGTAGTGTAGGTGACGTAGATGTGAGTACATTACAACTTGACAAGCTCCTCCAATCGAAACCAGAAGTGGAAAAGAACGACTGGTCTGTCAGTATCAAGGTTGCTTCGAGCCAACCAACGGTTAAGACAACACTTAACTCAAAACCGAAAATCACCTTGAAAGGTGTAACACCAAAAGTTTTCGTTCCTGTTAAAGCGGAAGTACTCCCTCCTGCGAATACGAAAGTAATCTCACCTGTTAATTCAAAAGTACTCCCtcatgcaaaaaagaaaacgtTAAAATTTTCCCCGACTTCAGCACCTCAGATCCGACAGAAGTTAGTTAGCAGTTCGCTTAAAAAAGACAACAATAGCAACAGCAAACAAGTAATTTTAAGATTAATTGATAAACATCTGCTTAACGCAAGACAAATTCTAAACTGCACTAACGCCACGCCAGTTAGAGCCTTTGACGGTATTGGATACTGCTGTAGTTACTGCAACGATCGGTACCCCACACCAGCTATACTCAAGCAGCACTGTTACCAAGAGCACGACGACACAGCAAAAAAACGTTTCATGAAAGGCGTATCTTTAAGCTTCCTCCTGATCAAACTTGATATCACTGACTTCAAATGTGTCCTTTGCGACAACATTTTAGAAAACTTAGAGAGTGCTATCAAGCATTTGAAAAGCGCTCACGACAAGGAGTATTACGATAATCTAAACAATCATATACTTGCGTTCAAGTTCGAATCAGATGCTATCAAATGCTCTGTTTGCTCGGTGTCAAACGTTAGTTTCAGAATGGCTGCAGATCATATGAAAGTGCACTACGGGAACTATTTGTGCGATATATGTAACGCACCTTTCATCATGAGTCATAGTCTTCAATCCCATATTAAAAGGCACGAGAAAGGGGATTTCCCGTGCCGATATTGCGAAAAGATTTATAATACACACACCAAAAGATATGCCCATGAAAATGCAATGCATAAAGGCGGTGTGTATCAAAAACCGTGCTCGTATTGTGATGAAAGATTCGGTAGTTACAAGAATAAAATTGAACACGAAGTTATGGTTCATGGTAGAAAGCCTTTTCAGTTTAAGTGTATGGCGTGCGATCTCGTTTTTCAAACGAGGGTGGCTATAACGAGACACACGAGAAGAGACCATCTTATGGAGAGGTCTCACGCGTGCAAGTTATGTGACAAAAAGTTCTTTGCATTGAAGAACTGGAAGGAACACATGCGCTCACATACGGGAATAAAGAAGTTTCAATGCGACGTCTGTTTGAAAGCTTACCCCAAGaaagaaacattaaaaaatcaTATTATTAGGGTACATGGCGATGGTGGAAGAATACACAAATGTGAATTTTGCGACCTGTCTTATTGCAAAAAGGGCAGCTTGAAAGCCCATTTGCGTTCTAAACATGACAAAATTCTAAACTATTAG
- Protein Sequence
- MKKLARNYVVLRRESPVKDCFSFIGKRGKKKRKRLKKEEGESVDKVEYTEKVEKHLPEFQKQWHNLTTLLKYSNATPFKDRNDAGYVCAYCFETFPDPQVLRSHTQNDHVRERPTYKAGSGMASFVAFLDIVDLKCTICEHPFDTLNHLTEHLVKIHDKKYYLGITDYFQPFKLTNEPQINCILCNEVFHNMKLLMQHMNLHYNNFICPTCGAGFVNSFRLNRHETTHVKKKSSFPCKHCGQVFSAESKRKAHINTDHKGIAGHSVCQICKARFKNYYQKTRHMIQIHNAEGIKCDMCDKKFNLKSNLMLHMRGVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKYKCDICGKAYATQNSRGKHMKKNHGISKSQLMAQSNRWGTSSVGDVDVSTLQLDKLLQSKPEVEKNDWSVSIKVASSQPTVKTTLNSKPKITLKGVTPKVFVPVKAEVLPPANTKVISPVNSKVLPHAKKKTLKFSPTSAPQIRQKLVSSSLKKDNNSNSKQVILRLIDKHLLNARQILNCTNATPVRAFDGIGYCCSYCNDRYPTPAILKQHCYQEHDDTAKKRFMKGVSLSFLLIKLDITDFKCVLCDNILENLESAIKHLKSAHDKEYYDNLNNHILAFKFESDAIKCSVCSVSNVSFRMAADHMKVHYGNYLCDICNAPFIMSHSLQSHIKRHEKGDFPCRYCEKIYNTHTKRYAHENAMHKGGVYQKPCSYCDERFGSYKNKIEHEVMVHGRKPFQFKCMACDLVFQTRVAITRHTRRDHLMERSHACKLCDKKFFALKNWKEHMRSHTGIKKFQCDVCLKAYPKKETLKNHIIRVHGDGGRIHKCEFCDLSYCKKGSLKAHLRSKHDKILNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -