Clat053789.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453321.1:17765463-17814961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0012 0.2 13.9 4.7 1 23 277 299 277 299 0.99 2 12 0.08 14 8.2 0.9 1 23 306 328 306 330 0.93 3 12 0.0033 0.56 12.5 0.4 1 23 332 355 332 355 0.98 4 12 0.0043 0.73 12.2 4.0 1 23 362 384 362 385 0.96 5 12 6.3e-07 0.00011 24.3 0.2 2 23 391 412 391 412 0.98 6 12 1.7e-05 0.003 19.7 2.0 1 23 418 440 418 440 0.98 7 12 2.9e-05 0.0048 19.0 4.0 1 23 479 502 470 502 0.96 8 12 0.012 2 10.8 0.1 1 23 508 531 508 531 0.94 9 12 0.069 12 8.4 0.8 1 13 540 552 540 555 0.88 10 12 0.012 2 10.8 0.1 1 23 582 605 582 605 0.94 11 12 4.3e-06 0.00072 21.6 1.0 1 23 614 636 614 636 0.98 12 12 6.1e-06 0.001 21.1 0.7 1 23 642 665 642 665 0.96
Sequence Information
- Coding Sequence
- atgatGCAATTAAACGACCTACGTGAAAATGTTGATCTTAAAATAGAATTCGACATAGTGAAACCGATATGCAGATGTTGTTTATCGACAAATAGGCGAATGTTGAAAGCTGTAATGTATGATTTATTGTTCAAAGATTTAGCCGGGATAAACGTCTCGGAGTCTGACGGTCTACCACAGTGGCTGTGCTGGGAATGCTGCGCCCTCCTCCGGAAAGCCGTGCGGTTCAAGCAAAAGATGCTGAGAGCACACACAATACTGTATGAGTATTCCAACAGGTGTGCCCCGTTCCCAATGGACGCACAGGACCCAGAACTGATGAAGTATGCATCGCCACAGTTGTCTACCTCGGAGACACTGAACTTTGAGATGAGTATGGATGATCATCTCGGGTACTACGAGCCTGTATGGCACGAAACCCTCCAGCCACTGAGTTCCATGGACATGGATGGCCTCAGCGTGAAAGTGGATGATGTGAAGGATGAGCTGGTCAACTTCTCCGATTGCGATTATGACGACGACATAGCGCTGAACGAGTACAAATCCAAACTCACCGATGATGACATAAAACAGCTGCTGCAGAGCCCCGCCCACGATCTGCTAGAAGAAAAGAGCAAGAGGAAGAAGAAGACGAAAAAGAAGGAAGCCAAAGTCAAGAAGAGAAAGAAGATAGTCGAAGATACGTCAGACTACGAAGTAAAACAGCCAAGATCTTCGATCAGGAAACCAATAGAGATAGACCCCGACAAGATCAAAGTCATCAACTTGAATCCGGAAGAACAAGTGCGACAGAGAGAGGAGGAGAGCAAGTCTGGCGTGAAGTTCCCGTTCCAGTGCCATCTGTGCTTCAAGGGGTTCAACTACGACAACAAACTAGAAAACCACATGAAGAAACACAGCCCGTCTCGCGGCACCTTCGAATGCAAGTTGTGCCACATGTTCCTACCGACCGTGTATAGCTACAACGTGCACCTGGCCATCCACACGCGTCGGTACGAGTGTAGGGACTGCGGCCGGCGGATGACCGACCGAGGATCCATCATAGACCATTACagAACGCAGCACGAAGGCCAAGTTACTCTCTACACGTGTGATATTTGTGGGAAAGTCTCCAGcaataaCAAAACGCATCGTGGCCACATGCGGAACCATCACAGCGGGGATCGCCCTAAGTGCGATCAATGCGGGAAGTCGTTCGTCAACAAGGATGCGTTAGCCGAGCATATGCAGATCCACCAAGGAGTGAAGAACTACGAGTGCGGCACTTGCGGGAAACGGTTCCGAACCAGAACACAGATCAAACTGCACCAGATGAAGCATTCGGACTCCAGGGATTATTATTGTGTCGAGTGCGACGTCAGAACGCAGATCAAACTGCACCATAGGAAGCATTCGGACTTCAGGGATTATTATTGTCTCGAATGCGACGTCAGGTTCGCGTGCAACCAGTGCGGCAAGCGGTTCGAGACCGAGTCGTCGCTGCGGAGGCACGTCATAGTGCAACACGAGGGCGTGCGCGCGCACCGCTGCCCGCAGTGCCCCGCCGCGCTCGCGTCGCGCGCCTCGCTGCTCAAACACGGGCGGGCCGTGCACGGCGGGAGGAGGCCGCCGCCCAGGCATGTGTGCGATACATGTGGAAAGGCGTTCAGGTCACACACACGCTTTCTCTTTTACACACCCTCTGTCTCAGTCACCCGCACTCTATCCCCGTGGCTCGCCCCGCCCCATCGCCCGCACCCCCCGCACCGCTGCCCGCAGTGCCCCGCCGCGCTGGCGTCGCGCGCCTCGCTGCTCAAacacgggcgggcggtgcatggCGGGAGGCGACCGCCGCCCAGGCACGTGTGCGACACCTGCGGGAAGGCTTTCAGGGGTAAGAGCGTGCTAACCAACCACGTGCGCACGCACACTGGCGAGAAACCGTTCTCGTGCAGCGAGTGTGGGCGCAGCTTTACGCAAAGGACCGCCATGCGGACGCACGTGAGGCTCGTGCACTTGAAGCAACCCAGACATACTAAGAGATTAGACACGCTAACACTAGCCAGACACACGTACACTACTAGACACACCAACACTAGTAGACCCACCCACGAACACTAG
- Protein Sequence
- MMQLNDLRENVDLKIEFDIVKPICRCCLSTNRRMLKAVMYDLLFKDLAGINVSESDGLPQWLCWECCALLRKAVRFKQKMLRAHTILYEYSNRCAPFPMDAQDPELMKYASPQLSTSETLNFEMSMDDHLGYYEPVWHETLQPLSSMDMDGLSVKVDDVKDELVNFSDCDYDDDIALNEYKSKLTDDDIKQLLQSPAHDLLEEKSKRKKKTKKKEAKVKKRKKIVEDTSDYEVKQPRSSIRKPIEIDPDKIKVINLNPEEQVRQREEESKSGVKFPFQCHLCFKGFNYDNKLENHMKKHSPSRGTFECKLCHMFLPTVYSYNVHLAIHTRRYECRDCGRRMTDRGSIIDHYRTQHEGQVTLYTCDICGKVSSNNKTHRGHMRNHHSGDRPKCDQCGKSFVNKDALAEHMQIHQGVKNYECGTCGKRFRTRTQIKLHQMKHSDSRDYYCVECDVRTQIKLHHRKHSDFRDYYCLECDVRFACNQCGKRFETESSLRRHVIVQHEGVRAHRCPQCPAALASRASLLKHGRAVHGGRRPPPRHVCDTCGKAFRSHTRFLFYTPSVSVTRTLSPWLAPPHRPHPPHRCPQCPAALASRASLLKHGRAVHGGRRPPPRHVCDTCGKAFRGKSVLTNHVRTHTGEKPFSCSECGRSFTQRTAMRTHVRLVHLKQPRHTKRLDTLTLARHTYTTRHTNTSRPTHEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -