Clat054665.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453322.1:10764978-10772879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0043 0.73 12.2 2.8 2 23 156 178 155 178 0.96 2 16 9.4e-05 0.016 17.4 2.5 1 23 186 209 186 209 0.96 3 16 0.023 3.8 9.9 0.5 3 23 223 244 222 244 0.97 4 16 0.00011 0.019 17.2 0.6 1 23 253 276 253 276 0.97 5 16 4.7e-05 0.008 18.3 1.3 1 23 288 311 288 311 0.97 6 16 6.3e-06 0.0011 21.1 1.0 1 23 336 359 336 359 0.98 7 16 0.00041 0.069 15.4 1.3 2 23 369 391 368 391 0.96 8 16 0.045 7.6 9.0 1.1 2 19 396 413 395 415 0.93 9 16 0.0044 0.74 12.1 1.9 2 21 429 448 428 451 0.94 10 16 0.011 1.9 10.9 2.2 3 23 461 482 460 482 0.96 11 16 1.7e-05 0.0029 19.7 1.8 1 23 487 510 487 510 0.97 12 16 0.00014 0.024 16.8 1.0 2 23 523 545 522 545 0.95 13 16 0.0011 0.18 14.1 0.8 1 22 563 584 563 586 0.90 14 16 0.043 7.3 9.0 3.2 2 23 621 642 620 642 0.97 15 16 0.007 1.2 11.5 0.2 1 23 708 730 708 730 0.97 16 16 0.21 35 6.9 2.0 1 23 736 759 736 759 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCAATAAAAGAGGAAGTTGATCtagtaattaaaaaagaaaagaatgatGAACTCGATGGTCGGAAAGACCCAACTTCATTCCTTCCCGAGGAACCAATGTCATATCAACTCAaagagaagaagaaaaaaaagaaaaagaaacaacaagaaGATCCATTTAAAGATTTAGAAGGGAAAGCACAAATATCAACTCTTACTGATAGTCCTCCAGAAATAGGATTAGATCCAGAAGTTACTATAAAAGTTGAAAATATTGAAGTTGAATTAGATTTTATGGATTTCACCAACCACGCCGGTCTCATGGTGGAGGGTCCAAATGACGACAGCCAAGAGCCTGCCGTCAAACTCGAAGAAGAGAACCGAGAAGCAGTTCTCTTAACATTCGAGAGCATCATCAACCAACAAGCAGGTCTTGATGAAAATGCAGAAAAACGTTTTGTGATGGCTGATCCGACCCTCATCTGCACAGAGTGTCATCTAGTCTTTCAATCAACAAAAACTTTAGAAACACACCAGAAAAGAAAGCATGAAGCATATAGATCCTTCGAACATATCTGCGATCACTGTGGCATGTCTTACGACATGAAGAACAGCTTGATAGCACATATGAGAAGAAAACACGGTCCCGACGCGAATCCAGATGACAAGGAAGAGAGGGCGTGTGATATTTGTGCTCTAGTCTTTAAAGGAACAAACAGACTGAGAATGCATATGAGAAGAAAACATGGCTCTTTCGAAGAGTCATTCACATTCGAGTGCCCGGATTGCGGTTTGACCTACGATAAGTACACAAGTTTGATAGTGCATAGAAAGAGGAAGCATTCAAAGATAAGGAAGCCAGTTGTTAACCAGTGGTACAACTGTCCGTTTTGTCCGAAGATATTTTCTAAGAGAGAGACGTATGTGAGGCATATACAGAGAAAGCACCAAGTGTCTGAAGAAGGTGCAAATAAGGCAAACGCAAGTTTAAAAAGCACTATAAACGAACAGACTGGAGAGTTTACTTGCAAAGAATGTCCCTTAGTGTTTTCTACCATTAATTCTTTGAAGCTCCATATGAGAAGGAAGCACAATGCTCTAGTTGAGGAATTTAGATTGAAATGTAAGATTTGTAATCTCTCCTACGATAAGATTGAGAGTCTCAAAAGGCATGTAAGGAGGAAACACGATAATTTCACCTATTGCGAAGTGTGCAACAAACACTTTGATTCTCAAGAAGCTTACATGGATCATTCTCATCCATCAACTCATCCATCAACTCATCCAAAGGTTGTAAAGGAGTGCCATATTTGTGGCTCAATTTTTGCGTCGCAAGGCGGCTTATCCAAGCATCTGAGGTGTACGCACAAACTGGATTCGCCGAAAGTTGTTTTCTGCAACATTTGCAACAAAGGTTTCCATGATAAAAGATATTTGAAACCACATTTGATGAAGGTGCATTTAAAAGCTTCTTACACTTGCACATATTGTAAGAAAGTCTTCAAAGCTAGAGAAAGTTACAGAAGACATATTTTGGTCAATCACCAAGGCATGAACAATCATTTCGATACTCAGATGCAGGAATGTGATAAATGTTCTGAGAAATTTTCTGATGAGTCCGAATTGTGTCAACATATAAATCTAGTCCACGGTGATAAATTGGTAGTGAAAGTTAAAATAGAAGAAGTTTCAGAACAAAGTTATCAATGCACTAAATGTCCAGAAGTATATTCAAGTTTTGAACAACTGAAGTTGCATTTCGAGGGCAAGCACCACTTTGGACCAGAAACCCAATGCCAAGTGTGCGGTGAAATAATGCCTGGCAGCGAAATAAGGGCACATATTAAAGAAATGCACTCAATCGATTTACAACAAAGTTGCAAATATTGTGAATTTAAAACGAAGAACAGAACCAGTATGACACAACACCTGTTGAGGCATAAGAATGCCAAGACGTTGCACTGTGATTTTCCTGGGTGTAAATATAACAGTTACTATGATGTAGCTATGCAAAAACACAAGCAGAAACATAAGGAGTTGGGTGTTAAACTGCAGTGCACAAAATGTGCTTTTCAAACTATGAATAAGTATATACTAAGGTACCACGAGGAAGCGCATACGACTGGGAAGAAAAGATATCAATGTGATCAATGCGATTATGCAACGATTTTGCCAGCCAACTTAGTCCAACATAAATATAAGCATTCCACTGAGAAAAGGTTTAAATGTGAAGTCTGTCCGTTTGCAACTAAGTACAACACATCTTTAAGATTTCATGTGAAAAAGAAACACTGTGATTTACCAACGTTTAgttaa
- Protein Sequence
- MVSIKEEVDLVIKKEKNDELDGRKDPTSFLPEEPMSYQLKEKKKKKKKKQQEDPFKDLEGKAQISTLTDSPPEIGLDPEVTIKVENIEVELDFMDFTNHAGLMVEGPNDDSQEPAVKLEEENREAVLLTFESIINQQAGLDENAEKRFVMADPTLICTECHLVFQSTKTLETHQKRKHEAYRSFEHICDHCGMSYDMKNSLIAHMRRKHGPDANPDDKEERACDICALVFKGTNRLRMHMRRKHGSFEESFTFECPDCGLTYDKYTSLIVHRKRKHSKIRKPVVNQWYNCPFCPKIFSKRETYVRHIQRKHQVSEEGANKANASLKSTINEQTGEFTCKECPLVFSTINSLKLHMRRKHNALVEEFRLKCKICNLSYDKIESLKRHVRRKHDNFTYCEVCNKHFDSQEAYMDHSHPSTHPSTHPKVVKECHICGSIFASQGGLSKHLRCTHKLDSPKVVFCNICNKGFHDKRYLKPHLMKVHLKASYTCTYCKKVFKARESYRRHILVNHQGMNNHFDTQMQECDKCSEKFSDESELCQHINLVHGDKLVVKVKIEEVSEQSYQCTKCPEVYSSFEQLKLHFEGKHHFGPETQCQVCGEIMPGSEIRAHIKEMHSIDLQQSCKYCEFKTKNRTSMTQHLLRHKNAKTLHCDFPGCKYNSYYDVAMQKHKQKHKELGVKLQCTKCAFQTMNKYILRYHEEAHTTGKKRYQCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -