Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453325.1:12938664-12940811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.22 37 6.8 0.9 2 23 158 180 157 180 0.92

2 14 0.23 39 6.7 0.5 1 23 214 236 214 236 0.97

3 14 0.00054 0.091 15.0 1.0 1 22 241 262 241 262 0.94

4 14 1.8e-06 0.00031 22.8 2.1 1 23 275 297 275 297 0.99

5 14 0.32 54 6.3 1.2 2 23 378 400 377 400 0.92

6 14 1.8 3.1e+02 3.9 0.4 2 23 407 428 406 428 0.94

7 14 0.24 40 6.7 3.2 1 23 434 456 434 456 0.96

8 14 0.00015 0.025 16.8 0.3 1 22 461 482 461 482 0.96

9 14 1.9e-06 0.00033 22.7 0.7 2 23 499 520 498 520 0.97

10 14 8.3e-06 0.0014 20.7 1.5 1 23 527 549 527 549 0.97

11 14 1e-05 0.0017 20.5 3.7 1 23 555 577 555 577 0.98

12 14 1.1e-05 0.0018 20.4 0.6 1 23 583 605 583 605 0.97

13 14 0.0023 0.38 13.1 7.7 1 23 611 633 611 633 0.97

14 14 6.9e-07 0.00012 24.1 2.3 1 23 639 662 639 662 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.22	37	6.8	0.9	2	23	158	180	157	180	0.92
2	14	0.23	39	6.7	0.5	1	23	214	236	214	236	0.97
3	14	0.00054	0.091	15.0	1.0	1	22	241	262	241	262	0.94
4	14	1.8e-06	0.00031	22.8	2.1	1	23	275	297	275	297	0.99
5	14	0.32	54	6.3	1.2	2	23	378	400	377	400	0.92
6	14	1.8	3.1e+02	3.9	0.4	2	23	407	428	406	428	0.94
7	14	0.24	40	6.7	3.2	1	23	434	456	434	456	0.96
8	14	0.00015	0.025	16.8	0.3	1	22	461	482	461	482	0.96
9	14	1.9e-06	0.00033	22.7	0.7	2	23	499	520	498	520	0.97
10	14	8.3e-06	0.0014	20.7	1.5	1	23	527	549	527	549	0.97
11	14	1e-05	0.0017	20.5	3.7	1	23	555	577	555	577	0.98
12	14	1.1e-05	0.0018	20.4	0.6	1	23	583	605	583	605	0.97
13	14	0.0023	0.38	13.1	7.7	1	23	611	633	611	633	0.97
14	14	6.9e-07	0.00012	24.1	2.3	1	23	639	662	639	662	0.98

Sequence Information

Coding Sequence: atgagaaaccttcgtttcaataaactgtggaacacagtagatgtggtcatcacaattgtgcgtgatcacttgCATTCTCTGAACCTACCAAAAAAGGTTTGTACAATATGTTTAACTTTCTTGGAAGGATCTTACGACTTCGTTTTAGCGGTGGAAAGAGCTCAACATACTTTGTTAGATTTAAATCTGGACACGAAACAAGAAATATGTGCTAATTTCGCAGCGACTGAAACAGTCTTGAAAGTAGAGGAAAAAATAGAAAACATTGATGTCGACGAAAATCCGTTTCAATATGAAGACGATCTACCTGCTCCCAAAGTCGAGGCACCTCTATTAGATAACTCAACATCAAATTCAACagatgaaaaagaaaatgaacctATAAAATTAAACACTAAGCAAAAATGTGAAAAGAAAAAGGACCAACCTCCTATAATTAATCCCCCATCAACTTGGCAAGACTACATCTGGAAGTGCGGGTTCTGTGACACTGAATTCCTCACTCACGAGGAACTAAAAACTCATGCTATGGAATTCCACAAATGTTGCAACGCACAAAAGTGCTATGATTGCAATATGCGTAATGGTAACTTAGAGGCGTTCAATAAGCATGTTTGTCTACACAGAAAGCACTTAAGCTATTCCTGTTATAAATGCTTTATAACATTCCCTACTATTAGCCTGGCTGGTCTACACAGAAACACACATAGGCCAACACCTCATTATTGCAAAGGCTGCAACACTACATTTGAAACGGAAAATCAATTGAAAGGTCACATGTCCACATATAGACTGAAAATAGGTACAACAAGTGAAAGCAATTACAaatgtgacatttgtggcaaaTGCTTTCTCAATAAGAAGGCTCTTAATCTCCACATGAGAGTACATGGCGaaagtataaaattaaatacaaagcaaaaaagtaaaaagaaaaacattggTGGTTCCAAAAATACACTTCACTATGAAGAAGATCCACCTGCTCCCTACATCGAGGCATCTGGAGATACCTCACCATCCAATTCAACAGATgaaactataaaattaaatacaaagcaaaaatgtaaaaagaaaCAGAACCAAACTCCTCTAATTAATCCCCCATCAACTTGGGAAGACTACATCTGGAAGTGTGGGTTCTGCGATACGAAATTCCTCACTCACGTGGAACTGAAATCTCATGCTATGGAGTTCCATAAATGTTGCAACGCACAAAGGTGCTATGATTGCAATATTCGTAATGGTAATTTAGAGGCATTCAATAAGCATGTCCGTCTACACAGAAAGCATTTGAGTTATTCCTGTTTTACATGCTTTAAGACATTCCCTTCTCCTTACAAAGCTGGTCttcacagacacacacatacacaggCACCTTATTATTGTAAAGGCTGCAATACTACATTTGAAACAGAGATAGAATTGAAAGATCACATGTCTACATATTATAGACTTTTTTGCAACAGAACAGCATCAAAAGCTGATGATGTATATTGTAAAGAATGTGATAAGACATTCGGCAATCCCAGATCGCTAACAACACATATGAAATTACATACGAACCGCAAAAGAGATTACATATGCGACACTTGTGGCAAATGCTTCATCAATAAGACAACTCTTAGTGAGCACATGTCCGCACATACTGACGAACGTCCATTTCCGTGCACTATTTGTACGCAAAGATTTAAACGACGAATTCACTTAATTAAACATCTCAAAACTCATCAGACTGTGAATCAATATATTTGTGATGTGTGTAACCGCAGTTACAAGTTAAAAAGTTATCTTGAAAGACATCAAATTGTACATACGAACTTGGTGCCGCATGTTTGCTGTCATTGCAACAAACGGTTTCGATACATAAGTGCTTTGAGGCTACATTTGAGGCAACACACGGGAGATATGCCTTATACTTGTAGCGTATGCCAACGGCAGTTCACTAATTGGTCCAACTGGAACAAACATATGAAGAGACGGCATAACATGAACATGTCCAAGCGTAAACCTGTTCCTGAAATGTCAGGGAGTGTGAAggaaaacattgaaactgtTTGCACTGAAAAGAAACGTGGGAAAAAATCAATGAAACCTGTAACAGGTGTTGTAAATCAAGTAACCAGTAATAATTTAGAACAATCATAG
Protein Sequence: MRNLRFNKLWNTVDVVITIVRDHLHSLNLPKKVCTICLTFLEGSYDFVLAVERAQHTLLDLNLDTKQEICANFAATETVLKVEEKIENIDVDENPFQYEDDLPAPKVEAPLLDNSTSNSTDEKENEPIKLNTKQKCEKKKDQPPIINPPSTWQDYIWKCGFCDTEFLTHEELKTHAMEFHKCCNAQKCYDCNMRNGNLEAFNKHVCLHRKHLSYSCYKCFITFPTISLAGLHRNTHRPTPHYCKGCNTTFETENQLKGHMSTYRLKIGTTSESNYKCDICGKCFLNKKALNLHMRVHGESIKLNTKQKSKKKNIGGSKNTLHYEEDPPAPYIEASGDTSPSNSTDETIKLNTKQKCKKKQNQTPLINPPSTWEDYIWKCGFCDTKFLTHVELKSHAMEFHKCCNAQRCYDCNIRNGNLEAFNKHVRLHRKHLSYSCFTCFKTFPSPYKAGLHRHTHTQAPYYCKGCNTTFETEIELKDHMSTYYRLFCNRTASKADDVYCKECDKTFGNPRSLTTHMKLHTNRKRDYICDTCGKCFINKTTLSEHMSAHTDERPFPCTICTQRFKRRIHLIKHLKTHQTVNQYICDVCNRSYKLKSYLERHQIVHTNLVPHVCCHCNKRFRYISALRLHLRQHTGDMPYTCSVCQRQFTNWSNWNKHMKRRHNMNMSKRKPVPEMSGSVKENIETVCTEKKRGKKSMKPVTGVVNQVTSNNLEQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -