Clat050667.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453319.1:16015166-16017987[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.5e-05 0.014 17.5 0.5 1 23 74 97 74 97 0.98 2 15 0.0036 0.6 12.4 1.3 1 23 170 192 170 192 0.98 3 15 0.027 4.6 9.7 0.2 1 23 196 218 196 218 0.95 4 15 0.0011 0.18 14.1 0.6 1 23 223 246 223 246 0.96 5 15 0.0015 0.25 13.6 4.4 1 23 252 275 252 275 0.95 6 15 2e-05 0.0034 19.5 0.2 1 23 282 305 282 305 0.98 7 15 1.5e-05 0.0025 19.9 1.5 1 23 311 333 311 333 0.97 8 15 0.11 19 7.7 1.4 1 23 456 479 456 479 0.96 9 15 0.039 6.5 9.2 0.1 1 23 551 573 551 573 0.94 10 15 0.00033 0.056 15.7 0.2 1 23 577 599 577 599 0.98 11 15 0.00049 0.083 15.1 1.2 1 23 604 627 604 627 0.95 12 15 0.0034 0.57 12.5 0.3 2 23 634 656 634 656 0.93 13 15 0.027 4.5 9.7 6.3 1 23 663 686 663 686 0.96 14 15 0.00014 0.024 16.9 2.5 2 23 693 714 692 714 0.96 15 15 3e-05 0.0051 18.9 0.6 1 23 720 742 720 742 0.99
Sequence Information
- Coding Sequence
- atgctGATGCACGCTATTTTGTCATTTTTAGGTGAAGACAATTATCCAACCGAGAGAAATAAAGAAGTAGAACTGAACGGTACAGAGAAAACATCGCGAATACCCCTGATTGGAGAACAAGCTATGAATCTGGACGACGAACTGAAAGCTAGGAAGAGAAATGTCGTGACTTTATTAGAAAATTCAAAGTTATGCCCTTTTAGATGGCTTAAAAATCTTTACCAATGTCTTTACTGTGAACAGCAGTTTGTAGATCCAGGGGCGTTAAGAGATCACCACAGATCTATCCATATAGCTCAAACAGCTACTCAAATTAAAGAAGCTTTATCAAAACTCAAGAAGTACGAGTTAATAAAAGTAGATATAACTGATGTTGATTGTAAACTTTGCGATGATGACATACCGGACCTCGCAAGCATAAAAAACCATTTgctaataaaacacaaaaagAATATAGACCCTAAATCCAGCGACGGTATTTTACCTTTCAAAGTGACCCGTGATGAATTTAAGTGTGCGATATGTGATAGTAATTACGCGGAATTCAAATCACTAAACCATCATATGAACGTTCATTTCCAAAACTTTATATGTGAGCAATGTGGCTCCGGTTTTATGACTCCAGAACGTCTAAGAACACACGCGTTCTCACACGAAACAGGATCTTTCCCTTGCGAAAATTGTGACAAAGTATTTAAATCAACTAATTCAAAGAACGAGCATTACGCCACTGTCCATATGCAAGTTAAGCGGCACAGATGCCCCCACTGCCCTGAGACTTTTAGAAATTACTTCCAGAGGAACAAACACATTTCCAATATCCACGGCTTGAAACTGAAAGAATTTAAGTGTTCATTGTGCCCTAAAGTATTCACTTTAAGTGGAAAGCTAGGAGTTCATATAAGAACAGTTCATTTGAAAGTAAAGCGCCATTCTTGCGATGTTTGTGAATGgaagttttactcaaaatctGAACTGAAGGAACACATGATTCGGCATGGTGGATCCGACCAGACAAACGTAACTCCGGATATACCGCAGCCGAAACAGGTCGTACCTTTGTTTCAAGTTGAATACGACCGCAGCCTATGTAGGCCTCTTGGGACTATCACCGACTTCAGCAAAATCGCAAACAAGAAGCCCAGAATAAGAGTCGCTACCAATCTTATGCCAACATATACACCTTCAAGAAGCCCCTCCCCTATGCCTATGATACCTGAATCCCCCGTATTTGTCAGAAGTAGCTTGCCTACTCCGATgaaacttcaaacttcaaaGCAGCCGAAAAACCCAGATGCCAGACAAAACGCCTTAACCGTCTTCGAATACAGCACTGTCTACCCTTTTATTTACGGAAGCAATAAGTTTAAATGCTTCGTCTGCACTCAGCCGTTTTTAGAGTTATCTTTGCTGAACGAACATATGAATGAATGCCACACATCCCTCGCTCCTTTAAAAAGATTGGTGAACAATAGAAGAGAGAATATCTTAAAAGTAGACGTAAGCGAGTTGActtgtaaaatatgttttatgaagCAAAACAGCTTGGCAGATATAAAGACTCATCTCAAATTTGTCCACCAGAAGCCGATAGACCCAGATTTGAAAGACAACCTTATACCTTTTAAACTTATTCCATCTGAAACGGGTTACAAATGTGTTATTTGTGATGAGAGTTTCATGAAAGTTCGAATATTAGTTATACACATGAGCGTACACTTCAATAACTACAGTTGCGAGATATGCGGATCCGGGTTTATGACGCTGcgtctgttaaaaaaacatcTAGAAGTTCACGAAAGTGGCAATTTTCCTTGTGAACGGTGTAACAAATCTTTTAGCACATCTTACAAAAAGAATCTTCACGTAAGAGGCGTTCACATGAAACAGTTACCTCGACGATGTCCAATATGTCCTGAAAGGTTTAATTCGAACTACAAGAGGACGATACACTTACAAGACGTTCATAATCAGTCGACTAGAGTGCATAAATGTGAAACGTGTGGACGAGCTTTTAACTTAAAGTATCATTTGATCTGCCATACTAGATCTGTACATCTCCAGGAGAGGAACCAACAGTGCGATATTTGCCTTCAAAGGTTTTGCAATAAAGAGACTCTGAAACGGCACATGGTGGTACATACGGGAGAAaagaattataaatgtgaagtttGTGGAATGGCATTTTTGAGGAGAAAGAATTTAAAAGACCATCTTAGGTTGCATGAAATGGGCTGA
- Protein Sequence
- MLMHAILSFLGEDNYPTERNKEVELNGTEKTSRIPLIGEQAMNLDDELKARKRNVVTLLENSKLCPFRWLKNLYQCLYCEQQFVDPGALRDHHRSIHIAQTATQIKEALSKLKKYELIKVDITDVDCKLCDDDIPDLASIKNHLLIKHKKNIDPKSSDGILPFKVTRDEFKCAICDSNYAEFKSLNHHMNVHFQNFICEQCGSGFMTPERLRTHAFSHETGSFPCENCDKVFKSTNSKNEHYATVHMQVKRHRCPHCPETFRNYFQRNKHISNIHGLKLKEFKCSLCPKVFTLSGKLGVHIRTVHLKVKRHSCDVCEWKFYSKSELKEHMIRHGGSDQTNVTPDIPQPKQVVPLFQVEYDRSLCRPLGTITDFSKIANKKPRIRVATNLMPTYTPSRSPSPMPMIPESPVFVRSSLPTPMKLQTSKQPKNPDARQNALTVFEYSTVYPFIYGSNKFKCFVCTQPFLELSLLNEHMNECHTSLAPLKRLVNNRRENILKVDVSELTCKICFMKQNSLADIKTHLKFVHQKPIDPDLKDNLIPFKLIPSETGYKCVICDESFMKVRILVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFPCERCNKSFSTSYKKNLHVRGVHMKQLPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDICLQRFCNKETLKRHMVVHTGEKNYKCEVCGMAFLRRKNLKDHLRLHEMG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -