Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453322.1:10698264-10734781[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.033 5.5 9.4 0.2 1 23 438 460 438 460 0.98

2 11 0.00031 0.052 15.8 6.6 1 23 474 496 474 496 0.98

3 11 2.8e-06 0.00047 22.2 3.4 1 23 502 524 502 524 0.99

4 11 3.9e-05 0.0065 18.6 2.4 1 23 531 553 531 553 0.99

5 11 2.7e-05 0.0046 19.1 0.2 1 23 559 581 559 581 0.93

6 11 1.3e-06 0.00022 23.3 0.5 1 23 587 609 587 609 0.98

7 11 6.4e-06 0.0011 21.1 1.3 1 23 615 638 615 638 0.95

8 11 0.0002 0.034 16.4 1.1 1 23 644 667 644 667 0.95

9 11 0.00019 0.031 16.5 0.7 2 23 674 695 673 695 0.97

10 11 3.2e-05 0.0054 18.9 0.8 1 23 701 723 701 723 0.97

11 11 0.027 4.6 9.7 0.2 1 22 729 750 729 750 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.033	5.5	9.4	0.2	1	23	438	460	438	460	0.98
2	11	0.00031	0.052	15.8	6.6	1	23	474	496	474	496	0.98
3	11	2.8e-06	0.00047	22.2	3.4	1	23	502	524	502	524	0.99
4	11	3.9e-05	0.0065	18.6	2.4	1	23	531	553	531	553	0.99
5	11	2.7e-05	0.0046	19.1	0.2	1	23	559	581	559	581	0.93
6	11	1.3e-06	0.00022	23.3	0.5	1	23	587	609	587	609	0.98
7	11	6.4e-06	0.0011	21.1	1.3	1	23	615	638	615	638	0.95
8	11	0.0002	0.034	16.4	1.1	1	23	644	667	644	667	0.95
9	11	0.00019	0.031	16.5	0.7	2	23	674	695	673	695	0.97
10	11	3.2e-05	0.0054	18.9	0.8	1	23	701	723	701	723	0.97
11	11	0.027	4.6	9.7	0.2	1	22	729	750	729	750	0.95

Sequence Information

Coding Sequence: ATGACTTCGAAATGTTTCTCCTGCAATGCCTTTGCGAACTCGAATATTCAGATATTTGGAAGTGATTTGCAACTGCAATCTAAAAGAAAGTTGGAAGATGTAATCAGTGAGATAATTGATAAGCCGCTGAAGAAAACCACTGCCCACAGTCAGGTATTGTGCCGGAAATGTTTCTCTAACATCAGCGAGTACGACTCTTTGCAAGTTCGATCGCAAGTTTTAAAACTCGGTTTTGTAACAGAATTTAAGAATACACTACCGCATCACAATCTCAACTATGATACATATGGCCAGTCTCCGGTGAAAACTAGAGTGGTGTTGCCAGCGTCCAAGCTACAACCGGTTCCGGCCAATTATATGTTTGATTTAGGGAAAATTGCTGCTGTGTCTAAGTGCTTGACATCCTCTGCTGCGACTACAGCAGTGTTGCCAGGATTGTATAAGGTTACAACAACCACAGCTAAACCGTCAGTCAACCTGAGAGTTACCGTTGGATCAACAGTTCTAACCCAAACATTGAGTTCCGGAATCACCACAAGCCGACCAAAAATAACAGTTTCCACAACGGACGTACTGACATCACCTCAGAAAAGCATAGATTATACAATCAGTGATAAAATAATATCTTCTTTAGTGACTCCAAACAAAACTGCTTCAAATAATCCCATGTTGAGTTATGTAAATTCTTTGACAAAGGAATTGTTGTCTTCTGCTGTCGGTAATAAGGATGTTGATGATGAGAAAACTGAGGAAGATGATAATAATATGGAGAATAATAATGACAATGGCATGGAGATTGAtgaagATTGTACGTTGGCAGTTGCTGTTGCAACCAATGAAGATGGGAAAATAGTTTTTGAGAACAAACCGATCGACATAAAATCCAAATCTAACTTCTTCGACGTCGGTCTTTTGCTCTCACAAGACGGTTCCCGCGAGAGTGACAAGGAAGGGAATTTCGTATTGGACAAGTTGGAGATATTAAACGAtgctgacgatgatgatgacgatgATGCTATAGTGATGGAGGACGGTACAAAAGCAACTATAATCCACATGGGCTCCGGACAGAGAGTGATGTATGATGGCAAACAGATATCCTTAGTTCAGGGGTCCGATAACGATGGGAACGATAACAACGATAGTTTGGATTCCAACGACGAGTCCCAAATAGAGCTGCAGGTATCGGGCGAGGAAGATATGGCAATAGCGAATGCACTCATCAACGCCGCGCAGGGACAAGCGGAGACAGTGAAAGGCGATGCTAATACCATAATGTCTCACTTGAAGAATGCACACAACGCGCGAGCTTACATATGCCTCATATGTGGAGTGGTTATGAGGAAGCGGACTGAATACACTACGCACTTGGAAACCCACACGGCCCAAGACAGGACCATCCTAAACAAATCCAAGCTGCACCAATGCACGACATGCAAGAAAAAGTTCAACTCTAAAACTCTTTTGCACGAACATATGAACGTGCACGCCGGGACGCGTCCGTACGAGTGTGAGCATTGCGGGAAGAGCTACGCTTCCAAATATACTTATCAATCTCATTTGAAGACACATTcgACCCGGCCTCGGCCCTTCAAGTGCGAGCAGTGCGACAAGACGTTTTTAACTCAGCAGAATCTCAACCAGCACGAGAAGACTCATTCTGGACTCAAAGAGTTCATCTGCAATATTTGCAGTAAAGCATTCGCCACCCAACACAATTTAGAAGTCCACGGCGTGATACATACAGGGTTGAGGCCTTTTTCCTGCCCCATTTGTCACAAAGCGTTCGCTCGTCGCGCCGAGATTCGGGACCATATGCGGATACACAcagGTGAACGTCCCTTCGCTTGCGACATATGCGGAGCCACGTTCACGCAGCGCTCGAACCTGCACTCTCACAAGCGAGCCACGCATCTGGACGACAAGCGATACCAGTGCCAACTGTGCCCCAAGCGGTTCAAGCGGAGACGACTCCTAGACTACCATGTAAAGGCGGTACACACCGGAGAACGGCCATTACAATGCGACATCTGCCGCGCCACGTTCGTGTATCCCGAGCACTATAAGAAGCATGCCAGAATACACAGCGGGGAGAAACCTTACGTTTGCGAGGTTTGCGGCAAATCGTTCAACTCGCGCGACAATCGCAACATGCATAGATTCGTGCACAGCGACAAGAAACCGTACGAGTGTCTCACATGCGGCGCTGGATATATGAGGAAACAACTACTTTACACGCATATGACTACTTCGgGAATATCAGCACCTTTAATAGACGTCCAAGGTATACAGATTGAAACGGATAAATTAACGGATAGTATATTAGAAGACACAGAAGAACTAGAATTGGATGAAAATGAAGTCAGTGCAGTTAaTAATTTGAACGGCCTCATAGCGACAACTGATGACAAACTAGATGACCAGCATGCGGTAAATATTTTGAGATAA
Protein Sequence: MTSKCFSCNAFANSNIQIFGSDLQLQSKRKLEDVISEIIDKPLKKTTAHSQVLCRKCFSNISEYDSLQVRSQVLKLGFVTEFKNTLPHHNLNYDTYGQSPVKTRVVLPASKLQPVPANYMFDLGKIAAVSKCLTSSAATTAVLPGLYKVTTTTAKPSVNLRVTVGSTVLTQTLSSGITTSRPKITVSTTDVLTSPQKSIDYTISDKIISSLVTPNKTASNNPMLSYVNSLTKELLSSAVGNKDVDDEKTEEDDNNMENNNDNGMEIDEDCTLAVAVATNEDGKIVFENKPIDIKSKSNFFDVGLLLSQDGSRESDKEGNFVLDKLEILNDADDDDDDDAIVMEDGTKATIIHMGSGQRVMYDGKQISLVQGSDNDGNDNNDSLDSNDESQIELQVSGEEDMAIANALINAAQGQAETVKGDANTIMSHLKNAHNARAYICLICGVVMRKRTEYTTHLETHTAQDRTILNKSKLHQCTTCKKKFNSKTLLHEHMNVHAGTRPYECEHCGKSYASKYTYQSHLKTHSTRPRPFKCEQCDKTFLTQQNLNQHEKTHSGLKEFICNICSKAFATQHNLEVHGVIHTGLRPFSCPICHKAFARRAEIRDHMRIHTGERPFACDICGATFTQRSNLHSHKRATHLDDKRYQCQLCPKRFKRRRLLDYHVKAVHTGERPLQCDICRATFVYPEHYKKHARIHSGEKPYVCEVCGKSFNSRDNRNMHRFVHSDKKPYECLTCGAGYMRKQLLYTHMTTSGISAPLIDVQGIQIETDKLTDSILEDTEELELDENEVSAVNNLNGLIATTDDKLDDQHAVNILR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -