Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453321.1:18783179-18784774[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1e-06 0.00018 23.5 1.1 2 23 90 112 89 112 0.95

2 14 0.0002 0.033 16.4 2.5 2 23 120 142 120 142 0.96

3 14 0.00084 0.14 14.4 3.1 2 23 149 171 148 171 0.93

4 14 1e-05 0.0018 20.4 0.9 2 23 179 201 178 201 0.97

5 14 0.00015 0.025 16.8 0.5 3 23 209 230 208 230 0.96

6 14 0.084 14 8.1 3.9 1 23 237 260 237 260 0.97

7 14 1.3e-05 0.0022 20.1 5.3 3 23 267 288 265 288 0.96

8 14 1.3e-05 0.0023 20.1 0.8 1 23 303 326 303 326 0.96

9 14 0.0021 0.35 13.2 1.0 3 23 335 356 333 356 0.96

10 14 0.00017 0.028 16.6 5.9 2 23 362 384 362 384 0.97

11 14 0.026 4.4 9.7 3.1 2 23 392 414 391 414 0.89

12 14 1.2e-05 0.0019 20.3 1.6 2 23 421 442 420 442 0.97

13 14 0.001 0.18 14.1 1.0 1 23 447 470 447 470 0.97

14 14 2.8 4.8e+02 3.3 1.0 3 20 487 504 485 506 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1e-06	0.00018	23.5	1.1	2	23	90	112	89	112	0.95
2	14	0.0002	0.033	16.4	2.5	2	23	120	142	120	142	0.96
3	14	0.00084	0.14	14.4	3.1	2	23	149	171	148	171	0.93
4	14	1e-05	0.0018	20.4	0.9	2	23	179	201	178	201	0.97
5	14	0.00015	0.025	16.8	0.5	3	23	209	230	208	230	0.96
6	14	0.084	14	8.1	3.9	1	23	237	260	237	260	0.97
7	14	1.3e-05	0.0022	20.1	5.3	3	23	267	288	265	288	0.96
8	14	1.3e-05	0.0023	20.1	0.8	1	23	303	326	303	326	0.96
9	14	0.0021	0.35	13.2	1.0	3	23	335	356	333	356	0.96
10	14	0.00017	0.028	16.6	5.9	2	23	362	384	362	384	0.97
11	14	0.026	4.4	9.7	3.1	2	23	392	414	391	414	0.89
12	14	1.2e-05	0.0019	20.3	1.6	2	23	421	442	420	442	0.97
13	14	0.001	0.18	14.1	1.0	1	23	447	470	447	470	0.97
14	14	2.8	4.8e+02	3.3	1.0	3	20	487	504	485	506	0.86

Sequence Information

Coding Sequence: ATGGAGGAGGTGGAAAGAGTTTTTATTAAACAGGAAGAAAACCAATTCcaaatggaaataaaattggaaGTAGAACATTGCGAAGACAATGATGCAAAAGGTTCATCAAACAACACAAATAGTGATGAAAGTATGGAAGAAAAATTAATGGATAATGGTTTGAGCGAGCATGCAACCGAGTCTGATGAAGATATTAAGGAAGATCATTTAGCTAGAACAATTGAGTTTGAAGGCACCGCCTTTGTCAACGGAAAGAGAAATCGATTAAAATGTCCCCAATGCGACACAACTTTTAAGAACAGGGCTAATTTGAAAAGCCATTTAAAGTACATACACGCTACCGACGACGAGACCAGAGAATGCAACATTTGCTTCAGAACTTTCAAGTCCTTAGTCCATTTAAGGTCACATACTAATTCAGTCCACGCTAACGTAAACGAGGTTACATGCGATCACTGCggcaaaacttttttaaacaagAAGAAATTAAATAACCACATTTTCTATACACACCCAAAGCCTGAAGAAAACCAAGTATGCAACATCTGCTCCAAAGTATTCCAAAATAAGTATAGATTGAAACTCCACATTCGCACAGTACATCCTGAAGGTAAAAATGTGTTCTGCCCTGAGTGTAAGAAAGAGTTTAAATCGGATATGTTGCTCCAAAGACACTTAAAATGGGCACATCCACCAGACGGCATGACTTACAGATGTCAAGACTGCGGTAGACTGTTACCATCTATACACTGTTACAAGAAACACTTGAAAAACGTTCATGGCTCCGGCAACATTAATTGTGAACACTGCGACAAAGTATTTcaaactaaaaacactttacaaAGACACATTAAGACGTGTCACGAAGgaattaaaattgagaaaaaggAGTACCGAAGCGGTCAGTTTGACTGCAATAAGTGTGACAAGAAATTTAGTACAGTCACAGCTTTGACATGGCATCAGGAACGGCTGCATTCTGACAACAAAGTGAATACTGCATGCCAGATGTGTTTCAAAGAGTTCGGTGATCACAATGGGTTGAAAAGGCACTTGGAAACCGTTCATTCTATGGCGACGGCTACTTGCCACTTATGCTCAAAGACTTTCAAATCTCACCTGAACCTGCAAAGGCATGTAAGGGTAACACACGCACCGCCGGAAGCAGCACAAACTTGTGACATATGTCAGAAGACATTCAAATGTTCCATGCATCTAAAGATACATGTATACGCAGTCCATCCAAAAGAAGGGAGGGTGAGCTGCGAGATCTGCAAAAAGGAATTTacatccaaaaagtatttgttaaaACACGAAAAAACACATAATAGCAAGGAGTTTCCTTGCCCACAATGTGGTAATTACTATAAAAGTTTACACGATGTTAAACGGCATATAAGTAGAGTTCACAATAAGGAAAGGCCTCAAGACCACTGTAATGCCATACAGAATAGATGTTGTTTGAAATGTGGCTTGGAATTTGAGGATGATTTAAAGTTACATTCCCATATAGTGAGCTGTGGTAGCTATGGTGGTGGTGAGGGGGAAAATTTCACTATAAAAATCGAAATTGAAGAGGAAGATGCAAATACGTAA
Protein Sequence: MEEVERVFIKQEENQFQMEIKLEVEHCEDNDAKGSSNNTNSDESMEEKLMDNGLSEHATESDEDIKEDHLARTIEFEGTAFVNGKRNRLKCPQCDTTFKNRANLKSHLKYIHATDDETRECNICFRTFKSLVHLRSHTNSVHANVNEVTCDHCGKTFLNKKKLNNHIFYTHPKPEENQVCNICSKVFQNKYRLKLHIRTVHPEGKNVFCPECKKEFKSDMLLQRHLKWAHPPDGMTYRCQDCGRLLPSIHCYKKHLKNVHGSGNINCEHCDKVFQTKNTLQRHIKTCHEGIKIEKKEYRSGQFDCNKCDKKFSTVTALTWHQERLHSDNKVNTACQMCFKEFGDHNGLKRHLETVHSMATATCHLCSKTFKSHLNLQRHVRVTHAPPEAAQTCDICQKTFKCSMHLKIHVYAVHPKEGRVSCEICKKEFTSKKYLLKHEKTHNSKEFPCPQCGNYYKSLHDVKRHISRVHNKERPQDHCNAIQNRCCLKCGLEFEDDLKLHSHIVSCGSYGGGEGENFTIKIEIEEEDANT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -