Clat050072.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453319.1:12758004-12762325[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.16 27 7.2 1.7 1 23 39 61 39 61 0.98 2 29 6.8 1.1e+03 2.1 0.3 2 23 90 112 89 112 0.90 3 29 0.084 14 8.1 3.4 2 23 133 155 132 155 0.90 4 29 1.3e-06 0.00022 23.2 1.1 1 23 160 183 160 183 0.96 5 29 0.027 4.6 9.6 2.8 1 23 187 210 187 211 0.92 6 29 0.076 13 8.3 0.6 3 23 214 235 212 235 0.95 7 29 0.046 7.8 8.9 1.0 1 19 241 259 241 262 0.94 8 29 5.9 1e+03 2.3 0.5 3 16 263 280 262 281 0.81 9 29 0.094 16 8.0 0.3 2 23 365 387 364 387 0.92 10 29 0.00024 0.04 16.1 1.9 1 23 409 432 409 432 0.92 11 29 0.0022 0.38 13.1 2.3 2 23 438 460 437 460 0.95 12 29 0.0017 0.28 13.5 0.3 1 23 465 488 465 488 0.97 13 29 0.00056 0.095 15.0 0.4 2 23 494 516 493 516 0.95 14 29 0.39 66 6.0 0.6 1 23 553 575 553 575 0.97 15 29 0.15 25 7.3 0.1 2 23 603 625 602 625 0.92 16 29 5.7 9.7e+02 2.3 0.6 2 23 646 668 645 668 0.93 17 29 9.7e-06 0.0016 20.5 4.6 1 23 673 695 673 696 0.95 18 29 0.0017 0.29 13.4 0.4 1 23 700 723 700 723 0.92 19 29 0.11 18 7.8 0.2 3 23 727 748 726 748 0.96 20 29 8.3 1.4e+03 1.8 0.1 2 19 755 772 754 774 0.86 21 29 0.011 1.8 10.9 1.2 1 23 829 852 829 852 0.90 22 29 2.1 3.5e+02 3.7 0.0 2 23 881 903 880 903 0.94 23 29 0.00011 0.019 17.1 0.4 1 23 925 948 925 948 0.97 24 29 0.00042 0.07 15.4 0.2 3 23 955 976 954 976 0.93 25 29 9.1e-05 0.015 17.5 2.2 1 23 981 1004 981 1004 0.92 26 29 0.00016 0.027 16.7 0.6 2 23 1010 1032 1010 1032 0.95 27 29 1.9e-05 0.0033 19.6 4.4 1 23 1036 1059 1036 1059 0.97 28 29 0.12 20 7.6 1.3 2 23 1066 1087 1065 1087 0.95 29 29 0.024 4.1 9.8 2.3 1 23 1093 1115 1093 1115 0.96
Sequence Information
- Coding Sequence
- ATGAAAGATGAAAATGAGGCGATCAATGCGCACAAAGCCAATAGGATCAAGAGGCGCAACCTGGAAATATTACTTAACAACACCAATGTTATACCTTTCAAGTGGCGCAGAAAATACATATGCTTTTTCTGCGGTCTCGATATTGAGAACTATGACCATTTTAAAGAACACACTATGACTCATAAGCAATGTACGATCAAGGACTGGGCAATAATGGGCGTGAAGGGAAAACAGACTGAATTAAAGTTTGACGTGTCCGGTGGAATCACTTGTCGTCAATGTGACGAACTGTTTCCCGATCTAGAGAGCGTTACGTTCCATTTGAGTACGAAACATAAATTGCAGTACAACAAAAAACACGAGTTCGGAATGAAAGGTTATAGGCTAGCCGATTGTAAATGTACGATTTGCGAAGTGAAGTTTAATAGTTTTTACAAACTAATAAAACATTCCAATGACTCTCATGCAGCTGAAACCTTCATTTGCGATGACTGCGGACAGTCATTCTCGAAGAAGAGGGACTTACAATCTCATATCCGTTACTATCACAGATCCGAGTATTTCTGTAGACAATGCGATCTAAAGTTCACAAGCAAAGCAGCTTTCTCTAAGCATAATGCCCGTCCTCATCATATCATTTGTGAAATTTGCTTCGAAGAATTTACATCAAATCTGAAAAGAAGGAAGCACATTCTGCGTAATCATTTCAAAAATAACGATTTCAAATGCGGTTTTTGCAAGAAGAAATTTGTTAGCAAAATATCTGTAATGCAGCACTTTGGGATGTGTAAAGCTAAAGAAGAATACTGTCGTAAAAAGTTCAAAAAGTCAGCTTCCCTAGACCTGGGCAATAGAAAACAAGTTTGTGCTCGCGCTAGGGACAATTTCATTTCCGTTTTTAATATGACCACAATAATACCTTTTAAGTACTATAAGAACAAATTCAAATGTTTCTTTTGTAACATAGAATGTTTAGATTGTGACGATCTCAGAAACCATGTTTCTCAACAACACTCCACGTGTGTTGACGAGGACGTTAAAAGGATTCGGCACACTGAAGAGCATCATATTAAAGTAGATATTTCTTCGCTATCTTGCAAGGTCTGCCATGAATCCATGTCAGATATAGATACACTTACAACTCATATTATAGACGAACACAAATGCGAATACGATAAGTCGTTCAATTCAAAATTCCAGTTATTCAAACTTATCAATAACAAATTCCCTTGTCTTGATTGTGGCAAAACCTTTAAAGAATTTTATGAATTGTTCAGACATCATAGTGCGGACCATTCGGAAGATGTAACAGTTTGCATGTACTGTGGAAAAtcgtttaaaagttttctaagtatGAAAGCACACATACATTCGCGCCATAATCCCGAAGGCTACAAATGTAGCATTTGTAAATTAGAGTTCACAACGACGTACCTTTTAGGTGGACATATGGCTAAAGTTCATGACAAAAAGAAAGTAAAGTGTAAAGTTTGCACGGAAACGTTTTCGACTCCATATGTTATGAAAAACCACATGGTTAAAGCCCACGATGAAAATGGGCCGGCTAAAGGGCAACATGCCAGTAGAAAGCGGAGGCGAAATCTGCAAATATTGTTCAACTACACCTCGATGATACCTTTTAAGTGGCGCGGGAAATATATGTGCTTTTACTGTGGAGATGACATTGATGACTATACTGAGCTCAAGCAGCATACTAAATCTCACGGCGTCTGCTCAGACAGGGACAGAGCTATTAAACTCGTCAAATCAAGGGATTCAGAAGTTAAAATTGACGTTTCGGATATGACTTGTGAAATATGTAACGAATCATTCGGTTACTTCGATGAAATCGTAGACCATCTGACGTCAAAGCATCAGCTCCCGTATGACAGAGAGGCTGACACAACTATCACAACCTATCGCCTACTAGATTTAAAATGTGTCTTCTGCGAAGATAGTTACGATACTTTCCCTAAACTTATAAAGCACACGAATTATAGCCATCCAATTAATTGTTTCATATGCCACGACTGTGACAGGAAGTTTAACAAAAAGAGGGATCTGGAATCGCACATTCGTATCCACCACAGAAAAGAGTATAATTGCAAAAAGTGTCCCCTCAATTTTCAGAACAACGCTGCTCTACAAAAGCACAAAGCACTCGCTCATATATCTTTGTGTAACATCTGCTTTCAACCTTTTCCTTCAAAAAGCAAGAAAGTAGATCATATAAAAGAAGCACATTTCAATAAAGAGCTTCTTGAATGCGGTTTCTGTCAGAAAAAATTAAGTACGAAACTAGCTGTTTTGAATCACGCAGGAAAATGTAATATGCAGCAATTTAGAGATGATATGTTAACTTACGAGCAGCCTGGCCCTCTTGACGACGGAAATAAAAAACCTACAGTAGCGGAAATAAGAAGCAATATATCTTGCATAGTTAACATGTCCACTGCACTaccattcaaatattttatgaaCAAATTCAGATGTTTTTATTGTCCCAAAGATTTTATCGAGTGTGACGCGCTCAAAGAACACACAGTTTTGGAACATCCGTCCTGTAGTAACAAATTGAAATGTCTTAGGCTTAGAAATAGGGAGCatggtattaaaattaaaatagacatttcgTCTTTGTCTTGCAAAATGTGTTTTGAACCTATGCAAGACTTGGACGCTTTAATAAACCACTTGATCACCGAACATAAAGCTCAGTACGATAAGTCTGTCGACAACAACATGCAACCGTTCAAACTCATTAGGGATAATTTCGCGTGCCCTTTTTGTGGGGAAGCTTACAGATACTTCAGTACTTTATTGAAACACATCAGCACTAGTCACACGGAAAATCGAAACATATGTTCGTATTGCGGTATGTCTTTCAGAACGGACCCAAGCCTTCGAGCACATATCACCCTTCGCCATAAACCCAGCGGACATAAATGTAACGTTTGCGATAAAGATTTTACTACCAGACACGCTTTGCGTGACCATTTAGGAAACGCGCACGGTAACAAAGTTGCTAAATGCCAAGTCTGCTCTGAAAGATTCACTTCTCAGTACGCGATGCAGAGGCATATGATAAACGTACACGCTACCGGCCATAAGTGTTCCTACTGCGGCAAAATGTTCACGAAGAACTCCTTCATGATCAACCACATACGACGCACGCATCTTAAAGAGAAAAACGTGGAATGCACAATTTGTTTCGAACGATTTTTCGACATCCATCTCTTGAGAATGCACACGGTCAAGCACGTCGGCGAAAGAAACTTTCACTGTGATATTTGCGGCAAAAAATTTCTCTGGAAGAAAAATTTAAGAGGGCACATGTCGTCgcatataaaaaatactaatatcCAGCTCCAAgcctaa
- Protein Sequence
- MKDENEAINAHKANRIKRRNLEILLNNTNVIPFKWRRKYICFFCGLDIENYDHFKEHTMTHKQCTIKDWAIMGVKGKQTELKFDVSGGITCRQCDELFPDLESVTFHLSTKHKLQYNKKHEFGMKGYRLADCKCTICEVKFNSFYKLIKHSNDSHAAETFICDDCGQSFSKKRDLQSHIRYYHRSEYFCRQCDLKFTSKAAFSKHNARPHHIICEICFEEFTSNLKRRKHILRNHFKNNDFKCGFCKKKFVSKISVMQHFGMCKAKEEYCRKKFKKSASLDLGNRKQVCARARDNFISVFNMTTIIPFKYYKNKFKCFFCNIECLDCDDLRNHVSQQHSTCVDEDVKRIRHTEEHHIKVDISSLSCKVCHESMSDIDTLTTHIIDEHKCEYDKSFNSKFQLFKLINNKFPCLDCGKTFKEFYELFRHHSADHSEDVTVCMYCGKSFKSFLSMKAHIHSRHNPEGYKCSICKLEFTTTYLLGGHMAKVHDKKKVKCKVCTETFSTPYVMKNHMVKAHDENGPAKGQHASRKRRRNLQILFNYTSMIPFKWRGKYMCFYCGDDIDDYTELKQHTKSHGVCSDRDRAIKLVKSRDSEVKIDVSDMTCEICNESFGYFDEIVDHLTSKHQLPYDREADTTITTYRLLDLKCVFCEDSYDTFPKLIKHTNYSHPINCFICHDCDRKFNKKRDLESHIRIHHRKEYNCKKCPLNFQNNAALQKHKALAHISLCNICFQPFPSKSKKVDHIKEAHFNKELLECGFCQKKLSTKLAVLNHAGKCNMQQFRDDMLTYEQPGPLDDGNKKPTVAEIRSNISCIVNMSTALPFKYFMNKFRCFYCPKDFIECDALKEHTVLEHPSCSNKLKCLRLRNREHGIKIKIDISSLSCKMCFEPMQDLDALINHLITEHKAQYDKSVDNNMQPFKLIRDNFACPFCGEAYRYFSTLLKHISTSHTENRNICSYCGMSFRTDPSLRAHITLRHKPSGHKCNVCDKDFTTRHALRDHLGNAHGNKVAKCQVCSERFTSQYAMQRHMINVHATGHKCSYCGKMFTKNSFMINHIRRTHLKEKNVECTICFERFFDIHLLRMHTVKHVGERNFHCDICGKKFLWKKNLRGHMSSHIKNTNIQLQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -