Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453301.1:9395976-9405787[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0082 1.4 11.3 1.5 3 23 621 642 620 642 0.96

2 23 0.4 67 6.0 0.3 1 22 1031 1052 1031 1052 0.95

3 23 7.8 1.3e+03 1.9 0.3 1 22 1093 1114 1093 1116 0.82

4 23 0.0014 0.24 13.7 0.7 2 21 1126 1145 1125 1146 0.94

5 23 0.2 34 6.9 0.0 3 23 1155 1176 1153 1176 0.93

6 23 0.33 55 6.3 0.1 3 23 1197 1218 1195 1218 0.94

7 23 0.082 14 8.2 3.4 1 23 1224 1247 1224 1247 0.95

8 23 0.15 25 7.4 0.0 1 23 1273 1296 1273 1296 0.90

9 23 0.045 7.6 9.0 3.3 1 23 1301 1323 1301 1323 0.96

10 23 0.011 1.8 10.9 0.2 1 23 1329 1352 1329 1352 0.96

11 23 0.0012 0.2 13.9 1.3 1 23 1365 1387 1365 1387 0.98

12 23 0.00021 0.035 16.3 1.8 1 23 1444 1467 1444 1467 0.97

13 23 0.0079 1.3 11.3 1.8 1 23 1532 1555 1532 1555 0.96

14 23 0.0028 0.46 12.8 2.1 2 23 1581 1603 1580 1603 0.95

15 23 0.1 17 7.9 0.1 2 23 1609 1631 1608 1631 0.93

16 23 0.012 1.9 10.8 0.2 1 21 1675 1695 1675 1696 0.95

17 23 0.0014 0.24 13.7 0.6 1 23 1706 1728 1706 1728 0.93

18 23 0.00013 0.022 17.0 0.3 2 23 1821 1843 1821 1843 0.93

19 23 3.9e-07 6.5e-05 24.9 1.4 3 23 1850 1870 1849 1870 0.98

20 23 0.011 1.8 10.9 0.5 1 23 1889 1911 1889 1912 0.95

21 23 0.11 18 7.8 0.0 1 23 1933 1955 1933 1955 0.98

22 23 0.032 5.4 9.4 0.6 1 23 1961 1984 1961 1984 0.95

23 23 0.0003 0.05 15.8 0.4 1 23 1992 2015 1992 2015 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0082	1.4	11.3	1.5	3	23	621	642	620	642	0.96
2	23	0.4	67	6.0	0.3	1	22	1031	1052	1031	1052	0.95
3	23	7.8	1.3e+03	1.9	0.3	1	22	1093	1114	1093	1116	0.82
4	23	0.0014	0.24	13.7	0.7	2	21	1126	1145	1125	1146	0.94
5	23	0.2	34	6.9	0.0	3	23	1155	1176	1153	1176	0.93
6	23	0.33	55	6.3	0.1	3	23	1197	1218	1195	1218	0.94
7	23	0.082	14	8.2	3.4	1	23	1224	1247	1224	1247	0.95
8	23	0.15	25	7.4	0.0	1	23	1273	1296	1273	1296	0.90
9	23	0.045	7.6	9.0	3.3	1	23	1301	1323	1301	1323	0.96
10	23	0.011	1.8	10.9	0.2	1	23	1329	1352	1329	1352	0.96
11	23	0.0012	0.2	13.9	1.3	1	23	1365	1387	1365	1387	0.98
12	23	0.00021	0.035	16.3	1.8	1	23	1444	1467	1444	1467	0.97
13	23	0.0079	1.3	11.3	1.8	1	23	1532	1555	1532	1555	0.96
14	23	0.0028	0.46	12.8	2.1	2	23	1581	1603	1580	1603	0.95
15	23	0.1	17	7.9	0.1	2	23	1609	1631	1608	1631	0.93
16	23	0.012	1.9	10.8	0.2	1	21	1675	1695	1675	1696	0.95
17	23	0.0014	0.24	13.7	0.6	1	23	1706	1728	1706	1728	0.93
18	23	0.00013	0.022	17.0	0.3	2	23	1821	1843	1821	1843	0.93
19	23	3.9e-07	6.5e-05	24.9	1.4	3	23	1850	1870	1849	1870	0.98
20	23	0.011	1.8	10.9	0.5	1	23	1889	1911	1889	1912	0.95
21	23	0.11	18	7.8	0.0	1	23	1933	1955	1933	1955	0.98
22	23	0.032	5.4	9.4	0.6	1	23	1961	1984	1961	1984	0.95
23	23	0.0003	0.05	15.8	0.4	1	23	1992	2015	1992	2015	0.96

Sequence Information

Coding Sequence: atGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATTTTTCCTACCACCAGTTCGGGTGATTCGGAACCTCCCGTTCTGGCATCGAAAATAAAGGATTGTGTCTCTGTTCAGATAAGCGAGAATGACGACCTGCCAACAAATGTCTGCAGGAAATGTGTGGATAACGTCAATAACTGGCATATATTCAAGGCAGTCTGTGAAAGGACTCAAAACAAACTAGAGTTACTGATTAAAAAAGATGGAAGCCAACTAGAAGAGATTAAAATAAAGAGTGAACCCCTATCAGATGGTGCATATGACGATGGTGTGGTCATTGATGGATCATATCTGGATAATGATGGAGCAACAGGGTCAGCCAAAGTGCAGCCAGAAGGCCCCCCAATCTTGGCTTCATTGGGGCTCACTCCAAGGAGTGATAAGAAAATAGATCCTCGAATGGACTGGCATCGAGTCCATGCAATACTGGACATGGTACAAGATGATGATGTAATTGACTCGCTGCAGTCTATAGAGGAATGTGATGTAATGCAACAATCAGATCATGACTCTGAGTCAGAATGCGAGCTTCAAAATGAAATTGATGATGCCTTTATAGACTTCAAGAATggatacatttgtaaaaataaaatgctgTTGTCAAAAGCTCCCAAAGTGCCTTCAACagatataaatgcgaaaattaaACAGGCCTCAACTCTCAGAAAACGTAAATTTGAGGAACCTAAGAACTGTATGATTCCAAAACAAGCATGGCAGCTGCTATTCAGTGATGATTTAATTGAGTTGATTGTGGTTTCAACAAACCACAGGATTCTTAAAATGGGTCATAGTATTGCATCATCTACCAGTGCTGGAGAAATAAAATCACTTATTGGTATTTTATACCTCCATGGCATTATGAGACCTACTCACCAAGTTAATGCTGACCTTTGGAATAAAGAATATGGTATGCCATGTATCAGGAATGCAATGAAGTATGACCGATTTAAGTTTCTGCTCCAAAATATATGCTTTGAAAATGAAGAGGATGAGAGCATAATAAGATTTGATATAATGAAAAGAATGAGAAAAGTGTTCGAAATATTTGCTATGAACTGTAGAGCGTCATTTCAGATAAGCAACTCGGCTGTTGTCGACGAAATAATTGTTCCTGTTTATGGCCCTTGCCCTTTTCGATATGAGAATAATAAAAAGCCTCTAAAATGTGGCTTGAAAATGGTACTTTTAGTAGACCCTGTCAACTTTTATGTCAACAACTTGGATGTCATAACTGATCCATATTTTGGTCCTGAGGAAGTTGTGAAAAAAATTGTTCAACATTTGTCTGGTTCGGGAAAGACAGTTATTATGGACAGTTGGTACACATCACTAAATTTGATTGAATTTTTGTTAAAGGAATATGAACTGTACTCCATTGCAGCTGTTCATGCAAATGATGATTTAGTTCCACCTGTATTTTTGTCTTCATACAGGAAAAAAGATAGTTATTTAACTGGGTTTTTAGATGAAAGCATCCAAATAACATCATACATTAATGCTGATAACAAATGTTCGAATGTTGTGACTAATGACCCAACATTTTACAAAAGGGGTTACACTGGTGCCAAACATTTAACTGCTGTTGCTGCTTATAAGAAGAGCCAGTCCGCAGTAGAAGGAGTCGAGAGTGAGAAAGAGGATGAAGAAGAAGACAATGAAGAAGAGGCCCCTGAGCCAGTTCAGAAATACGCAAAGGTGCCGCGCATGCCTGAAGTGTCGATCACCGTGATGCGCCCGTCAGGAGAGACGCTACACGCGCGCCAAGGGATCCAACAGCTCGCGTCCAAGGACTGCCTCGTGTGCGGCCGCTCCTACAGGTACTCCCACAATGCCCGACGCCACGAACTCACCTCTCATAGTTTCGATAGGTACACCAACAAAATTACTCACAAAAAACAACCCTCCCATATGCAACCGAAACTTAGGCCTAATCCGTTCAATCCGAAAGCGCGCTTAATGCCGAACCCGATAAGCCACAAAATCAAACTCATGTCCCATCCGATGCCGAACAAAATGGTCCCCCACAAAGTTCTGGCGCCACCGAAACCTACCTTAGTTAAGGCCAACAAATATCACCAGAATAACTTGCCCTACCCTTTGCGTATAAAGGCGTTGAAAGATTTGCAAATAAAGAAAAAGGAGCCTCAGATCTTGAAAACGCTTTTGACATCTAAGCCCGAAGTTCTAGTGGCTGAGCCTGAAATTCTTCATTCGGGGCCCGAAAGCCCGGAGACGTTGATTTCGGAACCGGAAATCGCATCATTTCAAGTAGAGACTGTACTGTCAGAGCCGGATGATGGCTATGATCAACAAGGGGAAGGGGGTGATGAGGAGGGTGAAGAAGGCGAAGCCAATAATCAAAACCAGCACTACGACACTGTGGACATGGAATCTGACAACGAAATTGAAATAGCTCGAGAACAAGAAAATGAGATTGATGAAGAAGATCAAAATATGGAATTAGAGAATAACCAACACGACGATGAAAATAATGCAGATGGTGCACAaagtgaaaatgaaaaaaataatgcgGAAGATAATGAcgaaaatgaagaaaataacGGTGAGGCCATTGAAAATAATGCCGAAGCCGATGATGTCAATGAACAGGAAGATTACAAAAACGAAGAGCAAAATGAAAATCATGACGAGCAAAATGAAAATCATGACGAGAACCCAGACGAGGATGATGACGATCTTCCTCCGATGGAAATAGCTCCTGTTGTCGAAATCAATGAGGATATGCAGACAAACTCCTACAACAGTGAGCAaaacgaagaagaagaagaggaaGAACTTGATGAAACAGCAGAATTGAACGATACCGTTGATGGCGCAGAGGGAATCAAAGAAATCGATCCTAAAGTATATGTGACAAAGTCACAGCGTGATTTCATCCAAAAATATCGCGACGTTATTGAACAGATCAATACTAAACGATGTCTTTGTTGTGATCGTGAGTATCCTCGCAGGAAAGCAGTCATACAGCACTTGCAGAAAAACGGGCATAAAGTGCCAAAACATACATGCTATAATTGTGTTGTTACTTTTGGTCATATTGGAGCTCTGTTAAGTCATATGCGTTCTAACTCGTGCACGAATTTATGGAAAATTATCTATGACGAAAATGGAATCACTGATGACATAGTTTTAGAGGATCCTAAAGATATTAAAGTTCAGTATAAAGACATTGTCAATGCTAGGTCGTATGCTTGTAAACTATGCCCAGCGAAATTCCAATTGAAGCAATTTATTATGAAACATGTACTAGATGTTCATGAAGATGGCCAATCTCACCTTCCACTTAACTGCGTCCATTGCGGAGCTAAGTTCAAAGACAAAAGTTTGATTAAAAAACATATTCGCAATGGTGAATGTACCGTTTATGTAGCTTGTGATTTATGTTCAGAAAAGTTTGCTACCATGTATGAATTTAACGAACATGCTATAAGCGTCCACGCCGGAAGCTTTGAGCAATCTGACAATCAAAGTAAATGCATCGACGGGCGACCTACAGATTGTCCGTTATGTGGCAAGAAGAATAGTGGCTATCCGAACTTGGTCAAACACTTAAAGGCTATTCATAATGAAGAAAAGCCACATTACTGTCAACACTGCGATGACAAATTCGAGTTTGCTACCGATCTGAACAAACATATTTACATGGAACATTCAGATCGAATTTTAGGCGTACCGAGCAGCGAACCAGATATGTCACTTGTTAAAGAAGAGGCTGAGGAGTATCATTACTCATGCACAGAATGTAACGCTATATTTGAAACCGTTGACGCGTGGACTGACCATCAGGTCGCGGAACACAatcagatcgctcaccactgtGACCAATGCGAAAagaaattcttacgtccatctGAGCTCGCCGAACATAAAAATTCTCATCTGCGTGTGAAATTCTATCCTTGCAGTGTATGTTCGAATTCATACAGCACACCCAAAAAGTTGTCTGAACACGTACAAAATGCCCACCCTGGAATAGGACAATTCCAAAGTCTGGAGTCTGAATTCTATTGCGACATTTGTATAAGATCATTCAAAAGTCGTCAAGCCTACTCAAATCACATGCGTATTCATGCCAAAGTACCGACTACTAACCGGAAGCCTGGTGAGCCGAATGAACCGAAGGCTTGGAAAGGTGGATTTGCACCACAAATAATCGGCAAGCCTATTAAACAATTGTCGGCGCAACAAACTCCTCCGAACTTCGTCATCAAACCAAATTGTGTTGTTCCTAATGCTCCTTATTCATGTGATATTTGTGGTAAAGGTTTTATGCATAAGAAGAATATTTGGAAACATAAAAAAGTACTTCATGCAGACCTCGTCAATGAAAGAAACGATAGCGAAGAAAATACTATGCATGCTTCTACCGAAGAAGATGAATATAATCAGGATGAAAACGGTGCTATGCTTTCGACACCGCAGTTTAACAGTTTCAACTTTACTCAATTCAATAATGTgcagcaacaacaacaacaacaactacAAGCCCAGGACCCGATGCCGTTCTCATGTGAACTTTGTTTCAAACGGTTTCCGCTAAGAACTAGTTTGTGGAAACATAAAAGGGCAAAGCATGGCGTCATTAACGTTAATGCGGGTGGCACCGAGTCTCAAGTTCAAGTGACTCCCAATGAAGCCGGTAACAGATCGAGTTGTACTATTTGTAGGATTACTTTTTCTGACAAGAAGTCTTACTATCGCCATAGAAAGAACGTCCATAAATCGACTACACAAATGTGCAAAATATGCGGTAAACCACTTAACTCGACGTTGGAGTTATACGAACATCTAAAAGCTGCACACGCTCGAGAATTGCTCGGGTATGATGCCAGTCAAGGTACAAGTAAAATGCCCGAAATGAAGGATGAATTAGAAGCAGAGTATGAGAACGATCAAGACTTGGCAGATCCGAGCGTGGAGTATCAAGCGAGGTACCCGTGCGACACGTGTGGCAAACAATTTGTTGGATTACTGGCGCTGCAAAATCATCAATGTATTAATCAACTGACGTCACAACCTCAAACGTTTGACTGTGAAATTTGCCACAAGAGTTACACGTCTATAGCCGCGCTTAAAAGTCACCGTGGGTGGCATTTACGATCGCCAGATGGGAAGGCGGCTGCGAATAATTCCGGCCTTTGGATGCCTCAACATAAAGTGACCAGTAAAGTGAGTAAACACGAAGTAGTAGACCCCGTACAGTTGGCGCGCGTGCAACAcgtgccgcccgccgccgctccCACCGTTCCCACCGTCCCGGCTAAAAGGCGACTTCCACCAGAAGTGGAAGTCACCGTCGTGAATCCGAATAAAAAGTTGCGGTCGGACGATTCCGTCGAATTTGAACAGTCAGTCGCCGCCGAGGATAGATACTGCACGATATGTGATAAAGAGTTTACGAAACGCGCCGCCTACCAGCGTCACATGGACGAGGTGCACCAGCCAAATTCCGTCTTCTGTCCCGTGTGCGATAAGAGCTTCACTCGGAAGTCGACCCTGCTCGTCCACATGAAGAAGCATTACGAAGGTGGGGAGGGCAGTTCGACGGGGATGGGTCAGATGGAGGAGGAGACGTACGCGTGTGACTTGTGTGGGGCGCAGTACGATAGCGAGAAAGCCTTGAAGAACCACCGGGCGAGACACCACGAGGAGGAGTCGGGCGAGTCCGACGATGAAGGCAGCGTGCCAGTGGCTCAGCCGGGCGAGTTCACGTGCGGACAATGCGGCGACGGCGTGGCCACCCCGCGCGACTTGATCGCCCACCGCTCCATGCACGCAACCCCGACCAAATTCTTCTGCAATATCTGCAAAGTTTACTTCGCCCGAGCTCTGGACCTGTCCTCGCACACGCGGGCGAGGCACGCCGACAACGAAAAGGTGTTTTTCCCATGTGCCATGTGTGACCGTTTTTACATGAACAAGAAGAGTTTGCAGCGACACATCGAAATGGCGCATTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSGDSEPPVLASKIKDCVSVQISENDDLPTNVCRKCVDNVNNWHIFKAVCERTQNKLELLIKKDGSQLEEIKIKSEPLSDGAYDDGVVIDGSYLDNDGATGSAKVQPEGPPILASLGLTPRSDKKIDPRMDWHRVHAILDMVQDDDVIDSLQSIEECDVMQQSDHDSESECELQNEIDDAFIDFKNGYICKNKMLLSKAPKVPSTDINAKIKQASTLRKRKFEEPKNCMIPKQAWQLLFSDDLIELIVVSTNHRILKMGHSIASSTSAGEIKSLIGILYLHGIMRPTHQVNADLWNKEYGMPCIRNAMKYDRFKFLLQNICFENEEDESIIRFDIMKRMRKVFEIFAMNCRASFQISNSAVVDEIIVPVYGPCPFRYENNKKPLKCGLKMVLLVDPVNFYVNNLDVITDPYFGPEEVVKKIVQHLSGSGKTVIMDSWYTSLNLIEFLLKEYELYSIAAVHANDDLVPPVFLSSYRKKDSYLTGFLDESIQITSYINADNKCSNVVTNDPTFYKRGYTGAKHLTAVAAYKKSQSAVEGVESEKEDEEEDNEEEAPEPVQKYAKVPRMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTSHSFDRYTNKITHKKQPSHMQPKLRPNPFNPKARLMPNPISHKIKLMSHPMPNKMVPHKVLAPPKPTLVKANKYHQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVAEPEILHSGPESPETLISEPEIASFQVETVLSEPDDGYDQQGEGGDEEGEEGEANNQNQHYDTVDMESDNEIEIAREQENEIDEEDQNMELENNQHDDENNADGAQSENEKNNAEDNDENEENNGEAIENNAEADDVNEQEDYKNEEQNENHDEQNENHDENPDEDDDDLPPMEIAPVVEINEDMQTNSYNSEQNEEEEEEELDETAELNDTVDGAEGIKEIDPKVYVTKSQRDFIQKYRDVIEQINTKRCLCCDREYPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYDENGITDDIVLEDPKDIKVQYKDIVNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSHLPLNCVHCGAKFKDKSLIKKHIRNGECTVYVACDLCSEKFATMYEFNEHAISVHAGSFEQSDNQSKCIDGRPTDCPLCGKKNSGYPNLVKHLKAIHNEEKPHYCQHCDDKFEFATDLNKHIYMEHSDRILGVPSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSVCSNSYSTPKKLSEHVQNAHPGIGQFQSLESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPNEPKAWKGGFAPQIIGKPIKQLSAQQTPPNFVIKPNCVVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNERNDSEENTMHASTEEDEYNQDENGAMLSTPQFNSFNFTQFNNVQQQQQQQLQAQDPMPFSCELCFKRFPLRTSLWKHKRAKHGVINVNAGGTESQVQVTPNEAGNRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYDASQGTSKMPEMKDELEAEYENDQDLADPSVEYQARYPCDTCGKQFVGLLALQNHQCINQLTSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPVQLARVQHVPPAAAPTVPTVPAKRRLPPEVEVTVVNPNKKLRSDDSVEFEQSVAAEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSTGMGQMEEETYACDLCGAQYDSEKALKNHRARHHEEESGESDDEGSVPVAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -