Clat034851.1
Basic Information
- Insect
- Crambus lathoniellus
- Gene Symbol
- -
- Assembly
- GCA_949710035.1
- Location
- OX453311.1:21978411-21987250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.1e-06 0.00035 22.6 2.1 1 23 133 155 133 155 0.98 2 18 0.00011 0.019 17.2 0.4 1 23 160 182 160 182 0.95 3 18 7.4e-05 0.012 17.7 0.3 2 23 203 224 202 224 0.97 4 18 4.7e-05 0.008 18.3 3.2 2 23 232 253 231 253 0.95 5 18 2.1e-05 0.0035 19.5 6.0 1 23 259 281 259 282 0.96 6 18 3e-05 0.0051 18.9 0.1 2 23 314 335 313 335 0.97 7 18 0.021 3.6 10.0 6.4 2 23 343 364 342 364 0.95 8 18 0.00085 0.14 14.4 3.6 1 23 370 392 370 393 0.94 9 18 1.3e-05 0.0022 20.1 0.3 2 23 426 447 425 447 0.97 10 18 0.00047 0.08 15.2 2.2 5 23 458 476 454 476 0.91 11 18 4e-05 0.0067 18.6 3.3 1 23 482 504 482 505 0.96 12 18 0.00043 0.073 15.3 4.8 1 23 510 532 510 532 0.97 13 18 1.2e-06 0.00021 23.3 2.2 1 23 538 560 538 560 0.96 14 18 2.8e-05 0.0047 19.1 0.4 1 23 566 588 566 588 0.97 15 18 2.5e-05 0.0041 19.2 0.8 1 23 594 616 594 616 0.98 16 18 1.3e-05 0.0021 20.1 8.0 1 23 622 644 622 644 0.98 17 18 2.3e-06 0.00039 22.5 0.4 1 23 650 672 650 672 0.98 18 18 0.00042 0.072 15.3 5.2 1 23 678 700 678 700 0.97
Sequence Information
- Coding Sequence
- ATGTTGCTGATTTGCACTTCAATAGCGGTAGAAAAAGAAGACAGATTACCAAAGAAATTATGTGGTGGTTGTTATAACTGTTTGGTCAGTTTTTATGACTTCAGAATACAAGCAGAAAAAGTAGAAGATGTTTTGAAACTTTCTCAAGATGAAATAGGGCAGTCCGAAACATTGATACCAGGAGAGAAAcaaattcaaattaaaattgaaattgaTCATCCTATTGAGAATCAGGATTACTATGATAATTTTGAAACTGATTTTAATGATTCTGATGAAGCAACAGCGGCAAAATGTGAGGACACATCAGAAAGCAATGATCAAGATTATTGTACCGTATTACAAGTTAAAGCAGAAACTTGTTACGAAACACAAGAATCTGTAGAAAACAGCAGCTATAAATGTAAAGTTTGTGATAAAATATTTAAGACTCTATCAATGTTACAAAAACATGAATCCAAACATAACGAGGAAGAGTATTCATGTAATTTTTGCTCTGAAACCTTTATTGATGAGTCTCAACTTGTGAGACATTTGGTACAGCATAGTGAAAAGAAAGAGTCAATGATCTTAGGAGTTAACCAAAATGAAATAAGCCAAACCTTAGAATGTGGTATTTGTTCAGCTAGCTTTAAATCTGTACATTCCTTGTCAGCTCACATGAGGGTACATGTTGAAAAAGGCAGAGTTTTATCATGCAGATTATGTGACAAAGTTTTCAAGAAGTTAAGTCACCTGAAAAGGCATGAGCTGTCACATGAGGTCAAACACCTTTATAAATGTAGTATTTGTCATAAATCATTCTATACTGAGAGTTTACTGAAtgaacacacaaacaaacaccaTGGCATAAAATCAGATGGTCATTTAGTAAAGTGTGAAAAGAAAGATGAGCCAATGCTATTAGAAGTTATCCAAAATGATATCGGCCGAAGTTTAGAATGTGGTATTTGTTCAATTAGTTTTAAGTCTGCAAATTCCTTATCTGCTCATATGAAAGTACATGTTGAAAAGGGTAGAGTTTTATCATGCAGATTATGtgacaaaattttcaaaaagttTTGTCACTTAAAAAGGCATGAACTGTCGCATAAAGTCAATAGACCGCATAAATGCAGTATTTGTCCTAAATCATTCTTTTCTGAAAGTCGACTGAATGAACACACAATCCTACACCATGGCATAAGATCGGATGGACTTTTAGTTCAGCATAGTGAAAAGACAGAAGAGCCAATGCTCTTAGAAGTTAACCAAAACGAAATCAGCCAAATCTTAGAATGTGGTATTTGTTCAGTTAGTTTCAAGTCTGCGCATTCCTTATCCGCTCACATGCGGGTGCATGTTGAAAAAGGCAGAGTTTTATCATGCATATTATGTGACAAAGTTTTCAAGAAGTTAAGTCACTTAAAAAGGCATGAGCTATCACATGAGGTCAATCGACCATATAAATGTAGCACTTGTCCTAAATCATTCTATACTGAGAGTTTACTGAATGAACACTCAAACCGACATCATGGCATTAAACCTCATCATTGTCCATTTTGCACTAAATCATTTAGTAATGTGTCTGGTTTTACAACTCATCTGAAAATTCACACAAGAGGGAAGATTTATCTGTGTTCCACTTGTGGTAAAAAGTTTGATTCCAGCACAAATTTAAATCAACATATGAAGAGGCACCTTGGTATTAAAACATTTGCTTGCAACTTATGCCCAAGATCTTTTATAAGCAAAGGTGAGCTCAAATCACACTTCATCACACACACAGGAGAAAAATCATACACTTGTGATCAATGTGGAGCGGCCTTTACTAAGCGCAGCTCATTGGTCAAACACAATCAGCGCCATCTAGGCATTAAACCGCATCAGTGCGAGACTTGTTCCAGAAAATTTACAAGCAAGAGTCACTTGAAGCGCCACTACCGCATTCACACGGGGGAGAAGCCTTATCGTTGCGAGATTTGTGAAAGAGCGTTCACCCAAAGCAACGATTTGGTCAAGCACAGGAGGGCGCATTTGGGCGACAAATTGTATAGATGTACCCATTGCACAGAAAGCTTCCGTCTCAAGAATGAGTTGCGCCACCATATATCCGAACATTTTATTTCGTCGCGGCTCCAAGGGATCGACATGAACTCTTCACAGAACTGTCCAAACAATAACACCGACAAAGAAGATGCACAGAAATTGAGTAAAACTACTGATATTGAAAAGGATGGAGGAATAATTAATATGGATGTAGAAAAAGAGGCTGCATCAGCTGTTTCCGAAGTGACTCAGTAA
- Protein Sequence
- MLLICTSIAVEKEDRLPKKLCGGCYNCLVSFYDFRIQAEKVEDVLKLSQDEIGQSETLIPGEKQIQIKIEIDHPIENQDYYDNFETDFNDSDEATAAKCEDTSESNDQDYCTVLQVKAETCYETQESVENSSYKCKVCDKIFKTLSMLQKHESKHNEEEYSCNFCSETFIDESQLVRHLVQHSEKKESMILGVNQNEISQTLECGICSASFKSVHSLSAHMRVHVEKGRVLSCRLCDKVFKKLSHLKRHELSHEVKHLYKCSICHKSFYTESLLNEHTNKHHGIKSDGHLVKCEKKDEPMLLEVIQNDIGRSLECGICSISFKSANSLSAHMKVHVEKGRVLSCRLCDKIFKKFCHLKRHELSHKVNRPHKCSICPKSFFSESRLNEHTILHHGIRSDGLLVQHSEKTEEPMLLEVNQNEISQILECGICSVSFKSAHSLSAHMRVHVEKGRVLSCILCDKVFKKLSHLKRHELSHEVNRPYKCSTCPKSFYTESLLNEHSNRHHGIKPHHCPFCTKSFSNVSGFTTHLKIHTRGKIYLCSTCGKKFDSSTNLNQHMKRHLGIKTFACNLCPRSFISKGELKSHFITHTGEKSYTCDQCGAAFTKRSSLVKHNQRHLGIKPHQCETCSRKFTSKSHLKRHYRIHTGEKPYRCEICERAFTQSNDLVKHRRAHLGDKLYRCTHCTESFRLKNELRHHISEHFISSRLQGIDMNSSQNCPNNNTDKEDAQKLSKTTDIEKDGGIINMDVEKEAASAVSEVTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -