Basic Information

Insect: Crambus lathoniellus
Gene Symbol: -
Assembly: GCA_949710035.1
Location: OX453325.1:350046-352775[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.9e-09 5.8e-06 27.7 0.0 2 40 24 62 23 65 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.9e-09	5.8e-06	27.7	0.0	2	40	24	62	23	65	0.92

Sequence Information

Coding Sequence: ATGCCGCCCTCAAAATCAAAATTAGCAACAAATGTGGACAAGGAGAAGAAGAAACGAATCCAGTATGACAGAAACAATTTAGTCCTTGCAGTCAATGCCgtgaaaaataatacaataggcGTCAGAGAGGCAGGAAGGATCTTCAAAGTTCCCAGAACTACTTTACAAGATAGATTAAATGGAAGGGTTTATGAGGACAGTAAAGTTGGAAGAGAAACTGTATTAAATCCTATTGAGGAACAAACTTTGGTAGAATGGTTGATGCAACTTGCAAAATGCGGATTTCCCAGAAAAAAGACTGATTTAATAAACACCGTCGCAAAAATAGTAAAAGACGATGGCAGaccaaatacttttaaaaacgGGAAACCCGGCTCTAAGTGGTACAATTTGTTCTTAAAACGTCACCCGACCCTGAGCGAACGGACACCAGAAGCTATCAGTCAGGCTAGAGCTATAGTTACTGAAGAGTTTATAAAGAAATGGTTCCGGGACTTGCTGTCATACCTAACAGAGACTGGAAACGTGGATGTGTTGCAAGATCCACGTAGAATATTCAACGGCGATGAGACAAGCTTTAATATATGCCCTAAGTCGGGAAAAGTAATTGGTCCAAAGGGATGGAAAAACATTTACAATATCGCGAAAGGGAGTGAAAAAGAAACCATTACTGTTCTTATCGTTGTTTCAGCATCTGGAGATACAGTATCTCCCATGGTAGTATTTCCATATAGCCGTAGACCGCCAAAGGAAATAATAGAGAGTGCCCCGTCTTCGTGGTTCATTGGGATATCAGAGAGTGGGTGGATGAGAAGTGGGCTTTTTTATGAGTATATAGCAAATGGTCTGAATCAATGGGTAACAGAAaatgatattaaaaaaccaattgTCCTCTTTGTGGATGGTCATAAGTCCCATTTAACCAAAGATTTGAGTGTTTTTTGCGCAGAAAATGGTATAATATTATATGCACTCCCACCGAACACCACACACTTAATGCAACCGGCTGATGTGAGTGTATTTAGACCTCTTAAACATCACTGGCGTACAACTGTTAAGGAATGGCAAGAAAACTGTGGTAATCGAACACTAACAAAAGTAACTTTTTGCCCGTTACTAAATGAAACTTTAAAACACCTCACAAgggaaacaataataaatggatttaaaaaatgtGGCTTGTACCCATTTAATCCTGAGGCTGTTGATTATTCCAAGTGCGTCAAAAACAAACACGAAACTATGTTGCAAGAAGAAGTAAGGGAAGAAACAATATCTGAAGCAGAGTTGAAAGCAACTCTAAAAGTTTTGGACCTTTGTGATATTGAATTCAAAAATGTAGGCATAGATCTAGCAACTGTTAAGAAAATAATTAGACAAAAGAAAGATAAAATTTCGGAAAGAAATACTGAAAAGGATTGCAATGTTAAGAGGAAAATACTGGACTGTGGCAACGAAATAGTAAGAAAGAcggtaaaaaagaaaaaacaagatGAGAACCTGACCGATATCTCCGACGACGCTTTGAATACTTCAACTGAACTGGATCAAGAAGGGATTTTAGAAGAACCTGATTGCGCAAAGTTTTTGGCATTGGAAGAGTCTAACGAGAGCGTTTCCATTTTAAATTTCGAAAATTTTGAGTGTACTATTAATGACGTTTTTCCAGTCAATGCAGAAATCTTAGAGACAGAGCCCCTTATATTGACGCCTATAGGTGATGAACCGCTTTTTGGTCTAAACACCAATGACCAAAATCCTAGATCAAGCTCACCCGAAGTTCCAGCTCAAATAGTAACTATTTATgcccaaataaataacttagaTAACTCTGTGACTCTACCAAAATCACCAACTGTTTCTATGAAAACTCTTGCTGAAGCTTCCCAAAGACATAGCCCAAATGACGCTACAACTAAATCAAACACCAAAAGTATTAAAATCAACAACTGTGACTTTTGTTTAGGGGATTGCACTTGcaaccttaaaataaaaaaaatgcctaAGGATATATCTTCTTTTTCAATAAGcaagagtattatggaaaaTATCGACTTTGCATCTGATTTTGATTTTTCTCTACCAGCATCACCGTCACCCAGTTTAACTGGACTGTTAAACATTAATTCTCCATCATCAAGAATGTTGAAATCTTCTCCGGCCTCTAGTCGTCCCGCTTCTAAAACAGCCACTCCAACTTCTAGGAACACATTGTCACCGGcgtttaaaaatcatttatttgcaccaAAATCGTTAGATTTTGGTAATAAAAGAAAACCGAAAGGAGAAAAGATGCCACTAGCTATATCCTCTGAAAAATGGAGACTATTCGTCAAGGACAAAGAGGATGAAAAAGAATCGATTCTCAAACAACGTGaggaaagaaaaaaaagggTTGAGTTGAATAAAGCAGAAAAGATTAGGCGTAAGTCGGAAATAGCACTGCGTAGATTAAACCGTAGACCAAAGAAAGTTACAGGAAAGAAGAAGAAATGTGCTAGTAACATTGAAAACGTGCCTCCAGGCTTAGataagaaagaaaaaattttttgtggTGGCTGTGAAGAAGAATTAATAAGTGACGTGGAAGAGGAggaattaaaaaatataggaTGTGATCTATGTCCTAAATGGTTCCATTTAAAATGTACATCTAATCGTGGCAGAAAATATGATGATGTGTCTGGAGAAGATTTTAAATGTCATCATTGTTTGATACATTTAATCTAA
Protein Sequence: MPPSKSKLATNVDKEKKKRIQYDRNNLVLAVNAVKNNTIGVREAGRIFKVPRTTLQDRLNGRVYEDSKVGRETVLNPIEEQTLVEWLMQLAKCGFPRKKTDLINTVAKIVKDDGRPNTFKNGKPGSKWYNLFLKRHPTLSERTPEAISQARAIVTEEFIKKWFRDLLSYLTETGNVDVLQDPRRIFNGDETSFNICPKSGKVIGPKGWKNIYNIAKGSEKETITVLIVVSASGDTVSPMVVFPYSRRPPKEIIESAPSSWFIGISESGWMRSGLFYEYIANGLNQWVTENDIKKPIVLFVDGHKSHLTKDLSVFCAENGIILYALPPNTTHLMQPADVSVFRPLKHHWRTTVKEWQENCGNRTLTKVTFCPLLNETLKHLTRETIINGFKKCGLYPFNPEAVDYSKCVKNKHETMLQEEVREETISEAELKATLKVLDLCDIEFKNVGIDLATVKKIIRQKKDKISERNTEKDCNVKRKILDCGNEIVRKTVKKKKQDENLTDISDDALNTSTELDQEGILEEPDCAKFLALEESNESVSILNFENFECTINDVFPVNAEILETEPLILTPIGDEPLFGLNTNDQNPRSSSPEVPAQIVTIYAQINNLDNSVTLPKSPTVSMKTLAEASQRHSPNDATTKSNTKSIKINNCDFCLGDCTCNLKIKKMPKDISSFSISKSIMENIDFASDFDFSLPASPSPSLTGLLNINSPSSRMLKSSPASSRPASKTATPTSRNTLSPAFKNHLFAPKSLDFGNKRKPKGEKMPLAISSEKWRLFVKDKEDEKESILKQREERKKRVELNKAEKIRRKSEIALRRLNRRPKKVTGKKKKCASNIENVPPGLDKKEKIFCGGCEEELISDVEEEELKNIGCDLCPKWFHLKCTSNRGRKYDDVSGEDFKCHHCLIHLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -